RNA id: TCONS_00067611


Basic Information

Item Value
RNA id TCONS_00067611
length 4295
RNA type mRNA
GC content 0.40
exon number 9
gene id XLOC_034739
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 25878553 ~ 25895472 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAtaactgttatttatttgtagGGGAGCAAGTAACACTGGAAGGCTCGTCTGTTTATAAAAAGCTGTGTTACAGCGTGCTAAAAAGCTGAGCTGAATGAGGAACCGCCCTAAAGCCGGTCTTGTAACGTGATCTAACACGCGGCTGTGAATCCAGCGCTGCTCATTCGCACTGCAGATCGTCTCGCAGGCTTTTTCGGCTCGACTAGTAACTGCGACCCTTAAAACTCCCGTTAGGCCCCAAGGACAAATAGCCATAAATACATCATCTGCTGCCAATATTTAATATCGCAGCAACCCAGTTGCCATTTCGGAGTTTTAACATGGAGAAGACGCTCTGGACATGGACGCTTCTAGCGGTCTTTTCTCTGCTGGTAGTGAAAGGCATGAGTGATGGACTAGACCTAGCAGATGCAttaggtgatgatgatgatgatgaaccaACTACCAAGCCACCTAAGGCGGATCCTGGAGCAGGCGGTGCTGGAGGAGCAGGTTTAGATGACTTCGATCTCGCAGATGCCCTAAACCCTGACAATGACATCAAAGGAAAGGGTAAAGACTCTGGCAAAGGTGGAAGTCAATTCTCAGACGATGACCTTTTGGATGTGGGAAACGATAACTCTTACAAACCCGACAAAGGCAAAGGTGGAAAAGGTGGAAGTTCCAGTAATGTTGGTGATTTGGATCCTGCTGACGACAACAACTACGACACCATGGCTGAGACTGGCACTATTGCTGGCATCGTGAGCGCTGTAGCCATGGCTCTGGTTGGTGCAGTGAGCAGCTACATCTCCTACCAGAAGAAGAAGCTGTGTTTCAGCATACAGCAGAGTCTGAATGCAGATATGGTGAAAGCAGATGCCCCAGATGCTGTAGTCGCACAGGAGCCACAAGTGCAACAAACTCTTCTCCAGCCTCCCAACGCCGAGCCACCAACAGAAGAAAATGCAGTTTAATCTCTAATGTCCAAACTGAAGAGGGCGCAGTTCTAAATTGTTGTTCTCCCATTCGAATGCCACTGTATTTCCCAGCACATTTGCACCACAACGCCCTTTTCCAAGTACCAATGTGACTGTTTAAATCAACCTTAAACATAGTgtaatatctttttatttatactATTCGAACTGTTTATATGCAACGATGATAGTAAGCCTGTCTGCAATAATATTGCTATGAaacaaaaaacagccaataatgAATTGTAGCATGACCTGCTAAGACCCCAgaaatcatatttgttttttttttaatggagccCCACACAAACTGCGCTAGTTTTCTTTGTTTAACAAATTAGCTCATCATTCCTATTGTGTACAAACACGTATTACTGAACAATGAGAAGACTGATTAATCCAAGGTTTACAGAAACGGCAGATTGGATAATCAAAGAAATATGCTTTTATAGGTCAAGACTGTGTTTCCCTTATGTTTTCGCAGCAAAAGTGTGTGTTGTGGAATCTGCGATTGAAACAAGATGAAGGATTTGTGAaggtttttagttttattgtggTCTGTATATATTTGCCTTGCTTTCACAGAGCAATGTGAAAAGATTGTTACACATATATGCAGGTTTTTGTGTCTTAGCGAACTTTTTACTAGAGTgacttttgaggaaaaaaaatggaTGAACTACTCAAGTCAAAAACTAACCGACAGCTGCTTCCTTCTAATttgctttaagaaaaaaaaaatgaattgactAAACTGTGAAGATGTGACGTGTGTTGATGAAGAAATTTTTGTGTGTTAGCTGGATGTCAGTGGTTGAGATTCCTTCTTTTGAGGAATAGATGAATTTGGCGTGATCAGATCGACTAGATACATTAGCGTCAAGTAATTGTGGTTGGAAGTAACCGAAGTTGTGTTTTCATGTTAGCGCAATACTTAAAACAGTGTAGTAACTCTCGTATGGCTAATTCTGATCACCTTTTTTGGGGGGATTTTAAGGGATTAATTAATGTGCTTGTATATTGCATACCGTTTCCAAGTTTGTACTCAAACCGTTGTATCAGTGTAGCTCTATTTACACTTGTAGCAGTAAATGTACATAAATGTTTGTGCCCCCCCACTCTTTTTGGATTACGGGGGAGTCGTTTTATCGCCCTAGCTTagtgtttgtattgtttgtagCATGTTTGAGCTTTAGCTTTGAGACTTTTTAGAGACCTGTTGCACCCTTCCTAGTTTTGCTATTGCCTTAATGAGCTGCTTTCCCACTTTGCTAATTCGCCAAGAGTTTGCAGTTTACAGACTCTAAATTTTTTACTGATTTGGAAAGTCAACATCTAAAACAGGCACGTAGATTTAGCAAAACCACACTGGAAAGCAGCTCTGTCCTTTCCATCCTCTCCCTCACTTGAGATGCTCCAGATTTTCCTGTAGCTGTTGTTTTTCACTGTGAATTCAGGTGCACCTTTGTTACCCCAAGCCCTTGCCAATGGTGCTTTCCTTCCCAATGCCTTACCACGCTAACATTAGGGAAGACACGCTAGCTTGCGAACACGGCACTAATAGTCACAACCATAAGAAGGGCTGCCTCACTTGAATGTCTACAAATCAGACGTACCAGGTTTAGTACGTTCTTCCAGTTTAAAGGTGCAGTCACATTCTcctaaactacaaacatggccaTTGATGTATGAAGCACAGATAGCTAGCATAAAAGTCAAGAGATTAGTCAGCATGGCATAGTTTATGCAAACAAAATTCATATTTATGTGGGTTTTCAATAGAAATGGCTGAATTTAGCCAATGAAAACTTGCTGGAAATGGCAAATGTAGCATATTTAAGGGACAAActactttaaataaatgtttggtcACAAAAATGTATGTTCCTATGGGTTTCTAATGAAATTCTTGAGTTTAACCTATGAAGGTTGTATTAAAGTGGCTATATTTCACCATAATCACATGACAAGTGGACCTTTCCCCCTATTCATGGTGGTTTTAATTGAAGTGCATAAATTTCACATGTGAAAATTTGCAAAACAATGATAAGTGGGGCATATATCTACAATAAAAACTTGTTTTGAAGACAATTTTACATTGAAATGGTCAAATTTGGACCATTAAAATTTGCCAAACAATGGTCAATGTGGCATATTTACTGACAAATCAAAATGTTTTACGCACAAACCTTTCATTTACATGGACTTCTATTAAAATGATTGTATTTGCCCTTAGAACAACGGCAAATGTGACTGCACCTTCACACTCTTTGCCGTTTGAACAGAACTGAAATATTGTTTACTCACATGCCCAAGATTAAGCAGAAGTCTTGTGAATGGTAATGATGTCAGAGACGTTGGGATGTTGCCTGAAACGTTCCTCGTTCCTTGCGTCCTACCATGGTTATTTGTACGGTGAAAACGAACAAACAGAATGTTAGCTGAATGTAATTCTTTATACGCTACCAGAACAATGTAGCTTTTTTTTGGTGCTACACTTGTCAGAAATGAAGAACACCAAAGATGTGATGGTTTTTGCCTTTTTGCATGCTCTTTGACTTTGGTGTATGAGTCTAGTGATCCGGTGGAATGAATCTGAAACAGCTGAGTAAAACAGCCTCGTTAAGGCAAATGTGGAAATTCACAAGTGTCTTGAACATTTTCAACCACAACATCATCACCTGTGTTGAACTGCTTCCAGATTTGTTGCTTGGACACATAATGTGACTGTTAAAACCCTCCCCAGTTATTTCAGTTCACCATCTGCATTTATGGGTAACTAGTATTTTATACGATGGCTGTTTTGTTTGCAAGGTTCTCTGGGCTCTCTGGTGTCGTCTGGCCAGTAGTCGCAATTTTGTCAAAACAAGGGTGTGCGCGCAGAACTGTACAGACATGCATGCTTGGATTTTAGCTGTAGATATTAAAGGTTTTTCTTGTGTACTGGGTTTATTTATGAACCTGACAAATATGCTATTTGGACAGACGTTTCTGAAGTGTCTTGATTTGCACTGCCAGTTCAGCTCTTGCATCATGGAACTGCCACAGATCTTATTGCCAATGCTGTaggttgtgtttttgttttcttgccATCATTGAACGAAATGAAATCTGGAAATGAAATAGCGACCTTCAGCGTGAAATCTCTCTTTTCATCAGTGGCTTCGCAATCAAATGCAGAATGTGATGAAAACCATATTTACACCGATATCAACTGGCAATCCTCTTCTAGACGTTTTAATATTCCAATTTCACTCTGTATCTCACTGGTTATACTTGGTGGCAAAAGATCAGCATAAAGAAACCCAATAATAAACAGTTTATCTCGTCTTTGA

Function

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0005886 plasma membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-1986 Predicted to act upstream of or within cell adhesion. Predicted to be located in cell junction and plasma membrane. Predicted to be integral component of membrane. Is expressed in nervous system; neural plate; pharyngeal arch 3-7 skeleton; tail bud; and trigeminal placode. Orthologous to human CD99L2 (CD99 molecule like 2).

Ensembl:

ensembl_id ENSDART00000187568

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00067602 lncRNA downstream 355086 25409156 ~ 25523467 (-) False XLOC_034735
TCONS_00067603 lncRNA downstream 355132 25470202 ~ 25523421 (-) False XLOC_034735
TCONS_00067601 lncRNA downstream 355141 25339756 ~ 25523412 (-) False XLOC_034735
TCONS_00067604 lncRNA downstream 355163 25470462 ~ 25523390 (-) True XLOC_034735
TCONS_00067593 lncRNA downstream 829179 25047617 ~ 25049374 (-) True XLOC_034730
TCONS_00069208 lncRNA upstream 93060 25988414 ~ 25995689 (-) True XLOC_034742
TCONS_00069209 lncRNA upstream 124711 26020065 ~ 26021046 (-) True XLOC_034743
TCONS_00069210 lncRNA upstream 244721 26140075 ~ 26156272 (-) True XLOC_034748
TCONS_00069211 lncRNA upstream 331073 26226427 ~ 26230153 (-) True XLOC_034749
TCONS_00069212 lncRNA upstream 380421 26275775 ~ 26281717 (-) True XLOC_034752
TCONS_00067606 mRNA downstream 181268 25558275 ~ 25697285 (-) True XLOC_034736
TCONS_00067605 mRNA downstream 184793 25558275 ~ 25693760 (-) False XLOC_034736
TCONS_00067597 mRNA downstream 744739 25129522 ~ 25133814 (-) False XLOC_034733
TCONS_00067616 mRNA upstream 1265 25896619 ~ 25930594 (-) True XLOC_034740
TCONS_00067617 mRNA upstream 8045 25903399 ~ 25934540 (-) True XLOC_034741
TCONS_00067618 mRNA upstream 152679 26048033 ~ 26049328 (-) False XLOC_034744
TCONS_00067619 mRNA upstream 152785 26048139 ~ 26049282 (-) True XLOC_034744
TCONS_00067620 mRNA upstream 177760 26073114 ~ 26076970 (-) True XLOC_034745
TCONS_00067608 other downstream 87198 25791229 ~ 25791355 (-) True XLOC_034738
TCONS_00067607 other downstream 115255 25763184 ~ 25763298 (-) True XLOC_034737
TCONS_00067600 other downstream 587401 25291033 ~ 25291152 (-) True XLOC_034734
TCONS_00067584 other downstream 1024655 24840701 ~ 24853898 (-) True XLOC_034727
TCONS_00067552 other downstream 1685473 24187581 ~ 24193080 (-) False XLOC_034711
TCONS_00067631 other upstream 405441 26300795 ~ 26304876 (-) False XLOC_034753
TCONS_00067641 other upstream 550666 26446020 ~ 26457812 (-) False XLOC_034760
TCONS_00067650 other upstream 618468 26513822 ~ 26513960 (-) False XLOC_034763
TCONS_00067676 other upstream 2262200 28157554 ~ 28157668 (-) True XLOC_034779
TCONS_00067677 other upstream 2384817 28280171 ~ 28280285 (-) True XLOC_034780

Expression Profile

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