Gene
RNA
| Item | Value |
|---|---|
| gene id | G127342 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000026 |
| NCBI id | null |
| chromosome length | 17172400 |
| location | 1569783 ~ 1569994 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| description |
|---|
| unnamed protein product |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU144682 | True | 212 | lncRNA | 0.39 | 1 | 1569783 | 1569994 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000026_01452548_01454060 | NA | coding | downstream | 115723 | 1451839 ~ 1454060 (-) |
| CI01000026_01433833_01436599 | GPHA2 | coding | downstream | 133184 | 1433820 ~ 1436599 (-) |
| CI01000026_01384408_01386103 | ARL2 | coding | downstream | 183680 | 1384364 ~ 1386103 (-) |
| CI01000026_01341481_01348949 | NA | coding | downstream | 220834 | 1341133 ~ 1348949 (-) |
| CI01000026_01263538_01270706 | ADAD2 | coding | downstream | 299077 | 1263484 ~ 1270706 (-) |
| CI01000026_01660894_01664126 | NA | coding | upstream | 90517 | 1660511 ~ 1665349 (-) |
| CI01000026_01855346_01933699 | DYSF | coding | upstream | 284690 | 1854684 ~ 1933699 (-) |
| CI01000026_02124326_02125256 | NA | coding | upstream | 554122 | 2124116 ~ 2125256 (-) |
| CI01000026_02267615_02268297 | NA | coding | upstream | 697308 | 2267302 ~ 2268335 (-) |
| CI01000026_02272961_02276148 | ACHE | coding | upstream | 702256 | 2272250 ~ 2276786 (-) |
| G127294 | NA | non-coding | downstream | 50584 | 1471683 ~ 1519199 (-) |
| G127282 | NA | non-coding | downstream | 159237 | 1408930 ~ 1410546 (-) |
| G127279 | NA | non-coding | downstream | 168855 | 1399306 ~ 1400928 (-) |
| G127278 | NA | non-coding | downstream | 176175 | 1393407 ~ 1393608 (-) |
| G127275 | NA | non-coding | downstream | 181587 | 1387979 ~ 1388196 (-) |
| G127343 | NA | non-coding | upstream | 880 | 1570874 ~ 1571089 (-) |
| G127349 | NA | non-coding | upstream | 2775 | 1572769 ~ 1573045 (-) |
| G127350 | NA | non-coding | upstream | 3772 | 1573766 ~ 1573972 (-) |
| G127352 | NA | non-coding | upstream | 5795 | 1575789 ~ 1576024 (-) |
| G127353 | NA | non-coding | upstream | 7680 | 1577674 ~ 1577885 (-) |
| CI01000026_00986386_01002180 | NA | other | downstream | 567194 | 986182 ~ 1002180 (-) |
| G127418 | NA | other | upstream | 165783 | 1735777 ~ 1736220 (-) |
| CI01000026_03439507_03490314 | PDE3B | other | upstream | 1810791 | 3438795 ~ 3490503 (-) |
| G129476 | NA | other | upstream | 2100580 | 3670574 ~ 3670884 (-) |
| G129658 | NA | other | upstream | 2797302 | 4367296 ~ 4373069 (-) |
| G129750 | NA | other | upstream | 3243056 | 4785885 ~ 4820249 (-) |
