RNA id: CI01000028_03608674_03621881.mRNA



Basic Information


Item Value
RNA id CI01000028_03608674_03621881.mRNA
length 1548
RNA type mRNA
GC content 0.43
exon number 4
gene id CI01000028_03608674_03621881
representative True

Chromosome Information


Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 3607598 ~ 3621909 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATATGGGTGTATACAGAATGATCACATCATGGAACAGAGTTTCTTGGAGCACAAACCATGTGACCCTGAAGAGAACAGCAAAACAGAAAGCGAGAGAGGCGGGCGGCAGTACATACAGCATAAACAGATTGTCATGGCCACAGAACAGCAGTTCTGGGCCATCAGCCAACTAGAGCAAGGAAAAAGAGCAAATTGCAGCCGCAGCACAAACAGACAGAAGATGCCTTGTCTGGCTTGTGATAAGATGGATGATGTCATTGCCTCGCAAAACCATCGCCAAACTATTGTTGTTTTTATGACGAGTCACATGGAGACGGGCCCGACGTTACACAGAGCCTATCGTCAGCTCATTAGCATCCATTGCATTGAAGAGAGGCAGTTAGCAGGCGAGGCTAACTCCAGGATCCCCTACAGCTGCTGCTGTGACTACGAGTTCAACACACCGGAGCGCTACACTACAGACGCGCCGTGATACATGCAGCCAACTGGCAGTTTGATGGTTTGGCGTTTAGTACGCGCCGCGCTGTCACGGCATTCTACGCCGAGCTTGTGTGTGTGCGTGCGCGCGGAGCTTTCCTACCCCATTCCGCTGTGTGTCTGAGAGCGGAGGCCGATGTCAAGAGTGACGGCCAGCCGACATCACCCGAAGTGTCCGCCGCCACTGCGCAAGATCCTCCCCGGCTGTGTTAAGCGACCAATGCTATGCCCCGAAGTGAAGCCGCTGGTTAAATATCAGATGCTTCAAATTGTTGTTTCGGTTCGGCTCCGAGCGGAAGACGAGACCTGGGGAAGACGGCAGATCATGACTCCGCTGTTGGAGACGCTGTCTGCATATTCCAGCTAGTAGTGTAGAGGTAGCAGAAGGCACTCAGACAGACAGTCGCTCTCGCGCTCATTACTCAACTCACTGTACACACATATGAGTGACACACTCGCTCGCTCGCTCGCTCACTCACTCACCCAGAGCTATATGAGGACTGTTTCAATGTGCTCCTTTCATATTAGATCATAATAATACACCGCCACCACCATTAAGAATAACATATTTGTATTTTATAATAATAAATATTATTCATATCATAATCCTAAATGTATGACAAAATATATATGTAAAAATATAAATGTATAACAAAATAACAAGAAAATAAAAATAAATACAGAACAAAATATATACTATGCTATAATATATATATATATATATATTGGTTTTGTGGTCCAGGGTCACACACACACACACACACACACATATATAGGGTGCAAAAACAATCAAAATATTGAGAAAATCGCTTTTAAAGTTGTCCAAATGAAGACCTTAGCAATGCGTATCCACTCACAAAAATAAATTTTTGATATATTTATGCTAGGAAATTTACAAAATATCTTCATGGAACATGATATTTACTTAATATCCTAATGATTTTTGGCATAAAACAAAAATCTATAATTTTGACCCATACAATGTATTGTTGGCTATTGCTGCAAATATATCCATGCGACTTATGACTGGTTTTGTGGTCCAGGGTCATATATGAGCATTTATACATTAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU166975 lncRNA downstream 38899 3568450 ~ 3568699 (-) True G146975
TU166948 lncRNA downstream 85052 3522327 ~ 3522546 (-) True G146949
TU166659 lncRNA downstream 90136 3517252 ~ 3517462 (-) True G146691
TU166656 lncRNA downstream 91957 3515422 ~ 3515641 (-) True G146688
TU166646 lncRNA downstream 107489 3499857 ~ 3500109 (-) True G146678
TU167034 lncRNA upstream 63842 3685751 ~ 3686505 (-) True G147025
TU167036 lncRNA upstream 74311 3696220 ~ 3697746 (-) True G147027
TU167037 lncRNA upstream 81575 3703484 ~ 3724594 (-) True G147028
TU167152 lncRNA upstream 215274 3837183 ~ 3837432 (-) True G147139
TU167157 lncRNA upstream 224853 3846762 ~ 3939137 (-) True G147143
CI01000028_03573572_03578958.mRNA mRNA downstream 28516 3572138 ~ 3579082 (-) True CI01000028_03573572_03578958
CI01000028_03526529_03542023.mRNA mRNA downstream 65469 3526079 ~ 3542129 (-) True CI01000028_03526529_03542023
CI01000028_03450349_03490905.mRNA mRNA downstream 115304 3449775 ~ 3492294 (-) True CI01000028_03450349_03490905
CI01000028_03307804_03308097.mRNA mRNA downstream 299282 3306644 ~ 3308316 (-) True CI01000028_03307804_03308097
CI01000028_03293038_03295110.mRNA mRNA downstream 311718 3293038 ~ 3295880 (-) True CI01000028_03293038_03295110
CI01000028_03628921_03634707.mRNA mRNA upstream 6781 3628690 ~ 3634879 (-) True CI01000028_03628921_03634707
CI01000028_03669254_03670964.mRNA mRNA upstream 47055 3668964 ~ 3671430 (-) True CI01000028_03669254_03670964
CI01000028_04014641_04074641.mRNA mRNA upstream 392564 4014473 ~ 4074813 (-) True CI01000028_04014641_04074641
CI01000028_04128511_04130775.mRNA mRNA upstream 506274 4128183 ~ 4130922 (-) True CI01000028_04128511_04130775
CI01000028_04161038_04162439.mRNA mRNA upstream 539121 4161030 ~ 4163103 (-) True CI01000028_04161038_04162439
TU166214 other downstream 1161285 2445722 ~ 2446313 (-) True G146272
TU166174 other downstream 1447560 2147378 ~ 2160038 (-) True G146238
TU166103 other downstream 1496333 2097570 ~ 2111265 (-) True G146190
TU164620 other downstream 3132252 475313 ~ 475346 (-) True G144886
TU164586 other downstream 3471810 135392 ~ 135788 (-) False G144855
TU169615 other upstream 3077604 6699513 ~ 6701240 (-) True G149329
TU169770 other upstream 3348848 6971561 ~ 6971711 (-) True G149468
TU169776 other upstream 3607882 7229791 ~ 7232783 (-) True G149474
TU169985 other upstream 3904053 7525962 ~ 7535743 (-) False CI01000028_07527725_07535631
TU169984 other upstream 3904105 7526014 ~ 7535743 (-) True CI01000028_07527725_07535631

Expression Profile