RNA id: TU166025


Basic Information

Item Value
RNA id TU166025
length 311
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G146117
representative True

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 1816826 ~ 1834020 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACACAACAAAGGGGGTGAGGCCATGTTGGGCTGCTTTAGAGAAGAGGAAGAGTTGTTGTAGTAGAGTGTTGTTGTCATGCCGTCATTTTACGCCGGACTGCTTCACAAACGAGGGTCAATTCAACGCTGGATTTGCACAAAAGATTAACATGACGGCACATGCTAGTCGATGAGTTAAATCAACTCCACAGCAACTACATAAATTTATCCACTAACCATTCAGAAACGTCCAGTTTCATTCTAAAAGTTGTAACTTCTTCCTGAATCTCTCCATCAGTGTCTGATCCGGTTTGAACAATGTAAGGCTGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165938 lncRNA downstream 45937 1693668 ~ 1693710 (-) True G146055
TU165947 lncRNA downstream 61286 1750999 ~ 1755540 (-) False G146064
TU165951 lncRNA downstream 61286 1750999 ~ 1755540 (-) False G146064
TU165953 lncRNA downstream 61286 1750999 ~ 1755540 (-) False G146064
TU165954 lncRNA downstream 61286 1750999 ~ 1755540 (-) False G146064
TU166030 lncRNA upstream 4055 1838075 ~ 1838276 (-) True G146122
TU166014 lncRNA upstream 4905 1838925 ~ 1855036 (-) True G146106
TU166010 lncRNA upstream 33291 1867311 ~ 1871322 (-) True G146103
TU166039 lncRNA upstream 39557 1873577 ~ 1873958 (-) True G146131
TU166040 lncRNA upstream 40014 1874034 ~ 1874436 (-) True G146132
CI01000028_01770721_01773265.mRNA mRNA downstream 43482 1770641 ~ 1773344 (-) False CI01000028_01770721_01773265
CI01000028_01707320_01709779.mRNA mRNA downstream 106220 1706758 ~ 1710606 (-) True CI01000028_01707320_01709779
CI01000028_01582515_01591864.mRNA mRNA downstream 224658 1582029 ~ 1592168 (-) False CI01000028_01582515_01591864
CI01000028_01403859_01408636.mRNA mRNA downstream 408146 1403706 ~ 1408680 (-) True CI01000028_01403859_01408636
CI01000028_01381059_01398155.mRNA mRNA downstream 418469 1379172 ~ 1398357 (-) True CI01000028_01381059_01398155
CI01000028_02036977_02046469.mRNA mRNA upstream 202289 2036309 ~ 2046469 (-) True CI01000028_02036977_02046469
CI01000028_02187324_02188153.mRNA mRNA upstream 352575 2186595 ~ 2188153 (-) True CI01000028_02187324_02188153
CI01000028_02190605_02195586.mRNA mRNA upstream 356548 2190568 ~ 2195964 (-) True CI01000028_02190605_02195586
CI01000028_02308696_02319050.mRNA mRNA upstream 474383 2308403 ~ 2319050 (-) True CI01000028_02308696_02319050
CI01000028_02327402_02338641.mRNA mRNA upstream 493160 2327180 ~ 2338641 (-) True CI01000028_02327402_02338641
TU164620 other downstream 1341480 475313 ~ 475346 (-) True G144886
TU164584 other downstream 1680950 135392 ~ 135876 (-) False G144855
TU164582 other downstream 1680969 135392 ~ 135857 (-) False G144855
TU166103 other upstream 263550 2097570 ~ 2111265 (-) True G146190
TU166174 other upstream 313358 2147378 ~ 2160038 (-) True G146238
TU166214 other upstream 607312 2445722 ~ 2446313 (-) True G146272
TU169615 other upstream 4865493 6699513 ~ 6701240 (-) True G149329
TU169770 other upstream 5136737 6971561 ~ 6971711 (-) True G149468

Expression Profile