RNA id: TU166288


Basic Information

Item Value
RNA id TU166288
length 246
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G146342
representative True

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 2566728 ~ 2566973 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CATGCCACACGCACTCATGCAACCCCATACCATCAGAGATGCAGGCTTCTGAACTGAGCGCTGATAACAACTTGGGTTGTCCTTGTCCTCTTTAGTCCGGATGACATGGCGTCCCAGTTTTCCAAAAAGAACTTCAAATTTTGATTCATCTGACCACAGAACAGTTTTCCACTTTGCCACAGTCCATTTTAAATGAGCCTTGGCCCAGAGAAAACGCCTGCGCTTCTGGATCATGTTTAGATATGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166286 lncRNA downstream 1635 2564876 ~ 2565093 (-) True G146340
TU166268 lncRNA downstream 91940 2474525 ~ 2474788 (-) True G146325
TU166255 lncRNA downstream 271444 2295064 ~ 2295284 (-) True G146312
TU166238 lncRNA downstream 277974 2241968 ~ 2288754 (-) True G146296
TU166243 lncRNA downstream 308177 2257551 ~ 2258551 (-) True G146300
TU166416 lncRNA upstream 208108 2775081 ~ 2775375 (-) True G146460
TU166417 lncRNA upstream 208629 2775602 ~ 2775836 (-) True G146461
TU166422 lncRNA upstream 227919 2794892 ~ 2795106 (-) True G146466
TU166425 lncRNA upstream 239761 2806734 ~ 2807045 (-) True G146469
TU166429 lncRNA upstream 256155 2823128 ~ 2823409 (-) True G146473
CI01000028_02543813_02547229.mRNA mRNA downstream 17351 2543813 ~ 2549377 (-) True CI01000028_02543813_02547229
CI01000028_02502422_02517922.mRNA mRNA downstream 48806 2502308 ~ 2517922 (-) True CI01000028_02502422_02517922
CI01000028_02478250_02488503.mRNA mRNA downstream 77220 2477985 ~ 2489508 (-) True CI01000028_02478250_02488503
CI01000028_02449364_02449920.mRNA mRNA downstream 116808 2448707 ~ 2449920 (-) True CI01000028_02449364_02449920
CI01000028_02441408_02445596.mRNA mRNA downstream 121132 2441383 ~ 2445596 (-) False CI01000028_02441408_02445596
CI01000028_02587692_02607824.mRNA mRNA upstream 20120 2587093 ~ 2607824 (-) True CI01000028_02587692_02607824
CI01000028_02610388_02621480.mRNA mRNA upstream 42833 2609806 ~ 2621943 (-) True CI01000028_02610388_02621480
CI01000028_02622413_02622621.mRNA mRNA upstream 55347 2622320 ~ 2622621 (-) True CI01000028_02622413_02622621
CI01000028_02640566_02655871.mRNA mRNA upstream 73524 2640497 ~ 2655871 (-) True CI01000028_02640566_02655871
CI01000028_02669701_02678061.mRNA mRNA upstream 102283 2669256 ~ 2678061 (-) True CI01000028_02669701_02678061
TU166214 other downstream 120415 2445722 ~ 2446313 (-) True G146272
TU166174 other downstream 406690 2147378 ~ 2160038 (-) True G146238
TU166103 other downstream 455463 2097570 ~ 2111265 (-) True G146190
TU164620 other downstream 2091382 475313 ~ 475346 (-) True G144886
TU164586 other downstream 2430940 135392 ~ 135788 (-) False G144855
TU169615 other upstream 4132540 6699513 ~ 6701240 (-) True G149329
TU169770 other upstream 4403784 6971561 ~ 6971711 (-) True G149468
TU169776 other upstream 4662818 7229791 ~ 7232783 (-) True G149474
TU169985 other upstream 4958989 7525962 ~ 7535743 (-) False CI01000028_07527725_07535631
TU169984 other upstream 4959041 7526014 ~ 7535743 (-) True CI01000028_07527725_07535631

Expression Profile