RNA id: TU166425


Basic Information

Item Value
RNA id TU166425
length 312
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G146469
representative True

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 2806734 ~ 2807045 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTTATTGAAGAACATAATTATATGTTGATTATAAAATTATATAATTATAATTATAAAACGGTTAGTTCCTGTCCTTGATTCTAATTGGTCAATAGCTGTGTTTTATTCACGATAAAACACGGCTATGACAGCTTCACCCAACGGTTCTGTGTATCACTACACAACACCCTTAGCAACCGCTCTTAGCAACGTAAACTGTTTGTTCTCAATTGATATTGTTCATTGAAGCTTACTGTATTATGTAGAAGAGTATTGTAAGAAAAAGATCAAGTGAGCGAGTTTATTACCTGCATTCAGATTGAGCATTTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166422 lncRNA downstream 11628 2794892 ~ 2795106 (-) True G146466
TU166417 lncRNA downstream 30898 2775602 ~ 2775836 (-) True G146461
TU166416 lncRNA downstream 31359 2775081 ~ 2775375 (-) True G146460
TU166288 lncRNA downstream 239761 2566728 ~ 2566973 (-) True G146342
TU166286 lncRNA downstream 241641 2564876 ~ 2565093 (-) True G146340
TU166429 lncRNA upstream 16083 2823128 ~ 2823409 (-) True G146473
TU166336 lncRNA upstream 59218 2866263 ~ 2867294 (-) True G146380
TU166342 lncRNA upstream 86325 2893370 ~ 2900789 (-) True G146386
TU166439 lncRNA upstream 165271 2972316 ~ 2974185 (-) True G146483
TU166442 lncRNA upstream 180664 2987709 ~ 2987994 (-) True G146486
CI01000028_02669701_02678061.mRNA mRNA downstream 128673 2669256 ~ 2678061 (-) True CI01000028_02669701_02678061
CI01000028_02640566_02655871.mRNA mRNA downstream 150863 2640497 ~ 2655871 (-) True CI01000028_02640566_02655871
CI01000028_02622413_02622621.mRNA mRNA downstream 184113 2622320 ~ 2622621 (-) True CI01000028_02622413_02622621
CI01000028_02610388_02621480.mRNA mRNA downstream 184791 2609806 ~ 2621943 (-) True CI01000028_02610388_02621480
CI01000028_02587692_02607824.mRNA mRNA downstream 198910 2587093 ~ 2607824 (-) True CI01000028_02587692_02607824
CI01000028_02851718_02864581.mRNA mRNA upstream 44673 2851718 ~ 2864581 (-) True CI01000028_02851718_02864581
CI01000028_02869789_02878890.mRNA mRNA upstream 62191 2869236 ~ 2879513 (-) True CI01000028_02869789_02878890
CI01000028_03083682_03096529.mRNA mRNA upstream 276555 3083600 ~ 3096529 (-) True CI01000028_03083682_03096529
CI01000028_03120344_03126349.mRNA mRNA upstream 313229 3120274 ~ 3127279 (-) True CI01000028_03120344_03126349
CI01000028_03128741_03141144.mRNA mRNA upstream 320849 3127894 ~ 3142533 (-) False CI01000028_03128741_03141144
TU166214 other downstream 360421 2445722 ~ 2446313 (-) True G146272
TU166174 other downstream 646696 2147378 ~ 2160038 (-) True G146238
TU166103 other downstream 695469 2097570 ~ 2111265 (-) True G146190
TU164620 other downstream 2331388 475313 ~ 475346 (-) True G144886
TU164586 other downstream 2670946 135392 ~ 135788 (-) False G144855
TU169615 other upstream 3892468 6699513 ~ 6701240 (-) True G149329
TU169770 other upstream 4163712 6971561 ~ 6971711 (-) True G149468
TU169776 other upstream 4422746 7229791 ~ 7232783 (-) True G149474
TU169985 other upstream 4718917 7525962 ~ 7535743 (-) False CI01000028_07527725_07535631
TU169984 other upstream 4718969 7526014 ~ 7535743 (-) True CI01000028_07527725_07535631

Expression Profile