RNA id: TU166336


Basic Information

Item Value
RNA id TU166336
length 867
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G146380
representative True

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 2866263 ~ 2867294 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGAGGAATAAGGGTCTTATCTAGCGAAACAATCGGTTTTCGAAATAAAATTGTATATACTTTTTAATAAAATGCTCATCTTGCACTACCTCTGTGATGCGCCACGCATTACGCAATCATGTCAGGTCACGCGTGACATAGGTCAAGTCAAGTCAAGTCACCTTTATTTATATAGCGCTTTTTACAATGTAGATTGTGTCAAAGCAGCTTTACATTGATAACTGGTACATTGTTAGGCTGCACAGCAGCTCTTAAAGAATAGTGTCAATGCAGGCAGATCAAAGCACTGTTGAATATCAAATGTCAAGTCAAGTGTCCCCAACCAAGCAAGCCAGAGGTGACAGCGGCAAGGAACCCAAACTCCATCAGGTGACATTAGGTGGCAGACAAGTGGCAAATTGGTGTTAAAATGGAGAAAAAAACCTTGGGAGAAACCAGGCTTAGTCGGGGTGCCAGTTCTCCTCTGGCCAACAGTGCTTTGTTACAATTCAGGTTGCTATCATAAGTCCAATAGGATCGCAACATTAAAAGTATTTTAATGGTGGAAGTACCAATCCACTGTTCCACATAGGTGGAAGTACCAATCCACTGTTTACAAAGTGAACGTGCAAAGACTAAGTCAAACGCCCTTTACAAAAAAAGGTAAATTTTGAAGTTGGAGGAGAAAATGAGATGGAGTTTTTCACCCTAACGCGGTACTTCCACCTACATCATGCGTGACCTTTCTGACGTGATTACAGTTGCAGTGCAAGATGAGCATTTGTGGTTAAAAAGTATATACATTTTTATTTTTTTAGAAAATGACCGATCATTTTGCTAGATAAGACCCTTATTCCTCGTCTGGGATCGTGTAGAGCCCTTTGAAGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166429 lncRNA downstream 42854 2823128 ~ 2823409 (-) True G146473
TU166425 lncRNA downstream 59218 2806734 ~ 2807045 (-) True G146469
TU166422 lncRNA downstream 71157 2794892 ~ 2795106 (-) True G146466
TU166417 lncRNA downstream 90427 2775602 ~ 2775836 (-) True G146461
TU166416 lncRNA downstream 90888 2775081 ~ 2775375 (-) True G146460
TU166342 lncRNA upstream 26076 2893370 ~ 2900789 (-) True G146386
TU166439 lncRNA upstream 105022 2972316 ~ 2974185 (-) True G146483
TU166442 lncRNA upstream 120415 2987709 ~ 2987994 (-) True G146486
TU166443 lncRNA upstream 120818 2988112 ~ 2988460 (-) True G146487
TU166447 lncRNA upstream 132959 3000253 ~ 3000472 (-) True G146491
CI01000028_02851718_02864581.mRNA mRNA downstream 1682 2851718 ~ 2864581 (-) True CI01000028_02851718_02864581
CI01000028_02669701_02678061.mRNA mRNA downstream 188202 2669256 ~ 2678061 (-) True CI01000028_02669701_02678061
CI01000028_02640566_02655871.mRNA mRNA downstream 210392 2640497 ~ 2655871 (-) True CI01000028_02640566_02655871
CI01000028_02622413_02622621.mRNA mRNA downstream 243642 2622320 ~ 2622621 (-) True CI01000028_02622413_02622621
CI01000028_02610388_02621480.mRNA mRNA downstream 244320 2609806 ~ 2621943 (-) True CI01000028_02610388_02621480
CI01000028_02869789_02878890.mRNA mRNA upstream 1942 2869236 ~ 2879513 (-) True CI01000028_02869789_02878890
CI01000028_03083682_03096529.mRNA mRNA upstream 216306 3083600 ~ 3096529 (-) True CI01000028_03083682_03096529
CI01000028_03120344_03126349.mRNA mRNA upstream 252980 3120274 ~ 3127279 (-) True CI01000028_03120344_03126349
CI01000028_03128741_03141144.mRNA mRNA upstream 260600 3127894 ~ 3142533 (-) False CI01000028_03128741_03141144
CI01000028_03144425_03151778.mRNA mRNA upstream 276289 3143583 ~ 3151778 (-) True CI01000028_03144425_03151778
TU166214 other downstream 419950 2445722 ~ 2446313 (-) True G146272
TU166174 other downstream 706225 2147378 ~ 2160038 (-) True G146238
TU166103 other downstream 754998 2097570 ~ 2111265 (-) True G146190
TU164620 other downstream 2390917 475313 ~ 475346 (-) True G144886
TU164586 other downstream 2730475 135392 ~ 135788 (-) False G144855
TU169615 other upstream 3832219 6699513 ~ 6701240 (-) True G149329
TU169770 other upstream 4103463 6971561 ~ 6971711 (-) True G149468
TU169776 other upstream 4362497 7229791 ~ 7232783 (-) True G149474
TU169985 other upstream 4658668 7525962 ~ 7535743 (-) False CI01000028_07527725_07535631
TU169984 other upstream 4658720 7526014 ~ 7535743 (-) True CI01000028_07527725_07535631

Expression Profile