RNA id: TU166447


Basic Information

Item Value
RNA id TU166447
length 220
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G146491
representative True

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 3000253 ~ 3000472 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGTGAGACTTCAGTGTAAACACCCACTGCTGTGATTGGCTGACATCTTTGCATATAAAATAGCTAAGTATTACATGTTTAAGTCTCTCAAAACCTTTTAGCACGTTTTTACTATTACAGCTCTCAAGGTTAACTAATTGTGTAAAGTGTTGATTATAATTTAGATCTATGGCATTATATTTAGATTGTGGCATGAAAGGTTGCAGTAATGAACATTGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166443 lncRNA downstream 11793 2988112 ~ 2988460 (-) True G146487
TU166442 lncRNA downstream 12259 2987709 ~ 2987994 (-) True G146486
TU166439 lncRNA downstream 26068 2972316 ~ 2974185 (-) True G146483
TU166342 lncRNA downstream 99464 2893370 ~ 2900789 (-) True G146386
TU166336 lncRNA downstream 132959 2866263 ~ 2867294 (-) True G146380
TU166453 lncRNA upstream 12820 3013292 ~ 3013678 (-) True G146497
TU166454 lncRNA upstream 15149 3015621 ~ 3015832 (-) True G146498
TU166479 lncRNA upstream 46195 3046667 ~ 3046966 (-) True G146522
TU166481 lncRNA upstream 51689 3052161 ~ 3052505 (-) True G146524
TU166482 lncRNA upstream 62440 3062912 ~ 3063853 (-) True G146525
CI01000028_02869789_02878890.mRNA mRNA downstream 120740 2869236 ~ 2879513 (-) True CI01000028_02869789_02878890
CI01000028_02851718_02864581.mRNA mRNA downstream 135672 2851718 ~ 2864581 (-) True CI01000028_02851718_02864581
CI01000028_02669701_02678061.mRNA mRNA downstream 322192 2669256 ~ 2678061 (-) True CI01000028_02669701_02678061
CI01000028_02640566_02655871.mRNA mRNA downstream 344382 2640497 ~ 2655871 (-) True CI01000028_02640566_02655871
CI01000028_02622413_02622621.mRNA mRNA downstream 377632 2622320 ~ 2622621 (-) True CI01000028_02622413_02622621
CI01000028_03083682_03096529.mRNA mRNA upstream 83128 3083600 ~ 3096529 (-) True CI01000028_03083682_03096529
CI01000028_03120344_03126349.mRNA mRNA upstream 119802 3120274 ~ 3127279 (-) True CI01000028_03120344_03126349
CI01000028_03128741_03141144.mRNA mRNA upstream 127422 3127894 ~ 3142533 (-) False CI01000028_03128741_03141144
CI01000028_03144425_03151778.mRNA mRNA upstream 143111 3143583 ~ 3151778 (-) True CI01000028_03144425_03151778
CI01000028_03182285_03183550.mRNA mRNA upstream 181713 3182185 ~ 3183749 (-) True CI01000028_03182285_03183550
TU166214 other downstream 553940 2445722 ~ 2446313 (-) True G146272
TU166174 other downstream 840215 2147378 ~ 2160038 (-) True G146238
TU166103 other downstream 888988 2097570 ~ 2111265 (-) True G146190
TU164620 other downstream 2524907 475313 ~ 475346 (-) True G144886
TU164586 other downstream 2864465 135392 ~ 135788 (-) False G144855
TU169615 other upstream 3699041 6699513 ~ 6701240 (-) True G149329
TU169770 other upstream 3970285 6971561 ~ 6971711 (-) True G149468
TU169776 other upstream 4229319 7229791 ~ 7232783 (-) True G149474
TU169985 other upstream 4525490 7525962 ~ 7535743 (-) False CI01000028_07527725_07535631
TU169984 other upstream 4525542 7526014 ~ 7535743 (-) True CI01000028_07527725_07535631

Expression Profile