RNA id: CI01000028_03182285_03183550.mRNA



Basic Information


Item Value
RNA id CI01000028_03182285_03183550.mRNA
length 1565
RNA type mRNA
GC content 0.45
exon number 1
gene id CI01000028_03182285_03183550
representative True

Chromosome Information


Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 3182185 ~ 3183749 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ACGTAACGGATGTTTGTCATGCTCCCAAAAAGCAAGTGTAGGATCAACTAACATTGATCCCCAAGGAAGAACAAAGAAACAGAGCGGTGCTTCAACGCAAGCACATTCTGTGTTGTGTGTCTCCCCACCATTTCCTGTAGAGACCAACATCCTTTCTTGCTTCTCAATTGTTGCCTTCTCTTAACTGAGCTGTTGTAAAATGAGAAAGACGTATACTAAATTCCTCATCTTAGCAGTAGCTAGCAGCCTTTGCTTAGTCATATTCTATTCCCAACTAAAGGATGTGGAACTCACACAAAGAGACTTGGCCAGACACCCTTCGGTTACAATTGTCACTCCTAGAAAACCCACAACTGTAGTCATAAGCACCATAAAAAAGAAAACCAAAAGTGTTATGCTGGTTGAACGTCCACCCCTTACTATTTCTGAGGATTTCAGAAAAGACATTCCCAAAAATGGTGCCTTCTGGAACCGAAAACTTCATTCTCTCCTCAGGCAGTTTGACTCCGCCAACAATAAAACGCGCAAGGACCCACATATGAAGTTTCACTGTCAACCGGAGAGTTCTGAGTTGCTACAAACCAACATTCAGGATATTCAGTCGTATCCTCCTCTTTACGGAGACTTCCTTAAAGGCATGGAGTGTCGAAACCCACCACTTCTTCATGATCAGCCTGGCAAGTGTGCATCAGATCAAATTTTCCTTCTCTTTGCAATCAAATCCATCCCAAAGCACTTCGAGAGGCGCCAAGCAGTCCGAGAGACCTGGGGAAGAGAAGGGTTGTATGAAAACGGACTTCAGGTACGAACGGTCTTTCTGCTGGGTCGATCATCTGCAGATGATCCCCCTCTCGACAAAATAGTTTCATTTGAAGCTCAGCAGTTTCAAGACCTGCTCGTTTGGGATTTTCACGACACCTTTTACAATCTGACTCTCAAGGAGCATGTGTTCTTCAAGTGGATGATGGATCGCTGTCCTCAGGTGTCTTTCGTTTTTAAGGGCGACGATGATGTTTTTGCCAACACTCAAGCGGTATTGAATCATCTGAAGTCTTTGGAGCCCGAACAGGCCTCGTCGTTGTACACCGGGCAGATCATTTCTGATGCCACACCGTTACGGGACCCTAAGATCAAATATTATGTTCCTCAGTCTTTCTATGAAGGCCCTTACCCTCCTTATGCTGGCGGCGGTGGATTCCTCTTTTCTGGAAACCTTCTCCCATCTCTTTATCATGTTTCCTTTTACATACCCTTCTACCCTATTGATGACGTCTACAACGGGATGTGCTTTAAAGCAATTGGAATCACTCCGACCAAACACGATGGTTTCAAGACATTCGACATTCGGGAACAAGATCGAGAGAACCCCTGTGTGCACAAAGACTTGCTCCTGGTGCACCAACGCAACCCTCAGCAGACCATGAGACTGTGGAAAAATATGCACAGCTCCATGTTGACCTGCTGATATGTTTGGTGAACGGACCATTATTAGACCATTTAGCTGTTGTGCTTGATAAAGCCCCATGTTGGATAAGAATAAGCTGGTAAAAATACTGTGCATTAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU166487 lncRNA downstream 24166 3157813 ~ 3158019 (-) True G146530
TU166338 lncRNA downstream 29081 3152919 ~ 3153104 (-) True G146382
TU166485 lncRNA downstream 36669 3145138 ~ 3145516 (-) True G146528
TU166348 lncRNA downstream 100616 3081248 ~ 3081569 (-) True G146392
TU166456 lncRNA downstream 113528 3067140 ~ 3068657 (-) True G146499
TU166495 lncRNA upstream 47956 3231705 ~ 3231925 (-) True G146538
TU166496 lncRNA upstream 54802 3238551 ~ 3238980 (-) True G146539
TU166329 lncRNA upstream 221457 3405206 ~ 3406196 (-) True G146373
TU166581 lncRNA upstream 239487 3423236 ~ 3423458 (-) True G146616
TU166583 lncRNA upstream 240519 3424268 ~ 3424495 (-) True G146618
CI01000028_03144425_03151778.mRNA mRNA downstream 30407 3143583 ~ 3151778 (-) True CI01000028_03144425_03151778
CI01000028_03128741_03141144.mRNA mRNA downstream 39652 3127894 ~ 3142533 (-) False CI01000028_03128741_03141144
CI01000028_03120344_03126349.mRNA mRNA downstream 54906 3120274 ~ 3127279 (-) True CI01000028_03120344_03126349
CI01000028_03083682_03096529.mRNA mRNA downstream 85656 3083600 ~ 3096529 (-) True CI01000028_03083682_03096529
CI01000028_02869789_02878890.mRNA mRNA downstream 302672 2869236 ~ 2879513 (-) True CI01000028_02869789_02878890
CI01000028_03194134_03203570.mRNA mRNA upstream 9510 3193259 ~ 3205414 (-) True CI01000028_03194134_03203570
CI01000028_03208231_03214842.mRNA mRNA upstream 24105 3207854 ~ 3214854 (-) True CI01000028_03208231_03214842
CI01000028_03218081_03228755.mRNA mRNA upstream 34016 3217765 ~ 3228755 (-) True CI01000028_03218081_03228755
CI01000028_03250213_03262711.mRNA mRNA upstream 66372 3250121 ~ 3262711 (-) True CI01000028_03250213_03262711
CI01000028_03264758_03280506.mRNA mRNA upstream 80770 3264519 ~ 3280506 (-) True CI01000028_03264758_03280506
TU166214 other downstream 735872 2445722 ~ 2446313 (-) True G146272
TU166174 other downstream 1022147 2147378 ~ 2160038 (-) True G146238
TU166103 other downstream 1070920 2097570 ~ 2111265 (-) True G146190
TU164620 other downstream 2706839 475313 ~ 475346 (-) True G144886
TU164586 other downstream 3046397 135392 ~ 135788 (-) False G144855
TU169615 other upstream 3515764 6699513 ~ 6701240 (-) True G149329
TU169770 other upstream 3787008 6971561 ~ 6971711 (-) True G149468
TU169776 other upstream 4046042 7229791 ~ 7232783 (-) True G149474
TU169985 other upstream 4342213 7525962 ~ 7535743 (-) False CI01000028_07527725_07535631
TU169984 other upstream 4342265 7526014 ~ 7535743 (-) True CI01000028_07527725_07535631

Expression Profile