RNA id: CI01000028_03194134_03203570.mRNA


Basic Information

Item Value
RNA id CI01000028_03194134_03203570.mRNA
length 3556
RNA type mRNA
GC content 0.29
exon number 11
gene id CI01000028_03194134_03203570
representative True

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 3193259 ~ 3205414 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATATATGCAAACTTATATATATATATATAAGTTTGCATATATGTTTTATTTATCACATTATATATATATATATATATATATATATATAATGTGATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATATATATATATATAATTTTGTTTAAAAAAATATTTTTCTGAGTATTATTTAACAAGTCAGGTTTTACAGGGTTCTTTTTTACAAAAAAAAAAAAAAAAGACCGCTCAGTGTAATACTACATTTTACTGTAACTTTTTGCACTCAAAACATATTGGAAATAAATAAATCAATATTATATTAGGGTACTTCAAAAATATGTATATATCGCAACTCAACTTTTATTTTGAAATGAAGCAGTAGACAGACATGTTGGACATGTTTCCGCAAGGGATGTGTTGATGTGGCTGGATTCCATAGTCTGCCGTTAAAGTTGTACTGTAAACAGTATTCATGGATAACTCTGGTAAAGAAAAAGAGGCCATGGCTCTCATGGCAGAAGCCGAAAAGAAAGTGAAATCCTCGCAGTCGTTCTTTGGCTCTCTGTTTGGGTAAGTTTTCTAACTTTTAACATACTGCTGACAGGCAAACCGGGGTAAACAGACAGTTAGCATGCTAGCCAGTTAGCTGTCAAACACAAACTTTATATAAGTGAATATCATAGTGAAAAAAAACTCTAAAAACATTTTCTTCTGCCATATGAGAATGTTTGGATGTTCATCGTAAAACCACATTTAATTTTAATCGTCTTTTAAGTTTAGTTTAGCAACGGCTAATTGTAATAAATCTACATATTGTCAGTATAATTTTTTTGTCTGTGTAAATCTATATCTGTGTCTCTATATTGCAAAGGTTGAGATCTAGTCTTGTGATCTGGCGCTGTACTTCCATAAAAACTAATGATCATAGTCTGGCGATGAGACAGTGAAATGAAGTCAGCTGACATCCACTTGAGCCCGTTACAACATCACTGAACGTATATGAACGCTGATAAACCCCAAACCCGTAATGTGTATAGATAGATAGATAGATAGATTAGGAAAAAAACATGTTAAAATGTGAGTATTAAAAATGATACAGCAGGCTTTTGAGGAACGTTTATTTATACATTTCTCAATCATCATTGAAATTGCATAATTCCAATTTAAATCTACAGAACTTTGAGGTGTTTCTTATTTCTCTAGTATGAGCTCCTTATTCTCACTATACCATACTATATGGGCAATAAAAGCATCAGATGTAATAATTTAACATATATTCAAACTTTTTTTTAGATTTTTTAAACATATTTTGTTTAAAGGTTCATTACACTGTTCCATTTCAAAAGAATATATAGAATATATGAACATTCATATCAACTAATCAATACTAATTGTAATAATTTGTTCCCTTGTTTCAGTAAAATCAAAACGAGGAAACAAATTAGTTCAGCGTGGGCATGATTTACTAAAACGAGGGAACTTTTGGCCATTCATTTACATGACAACAGTGTTTTGGGGGCCTGAAAATGCAAACTTTTAAAAAGTTAAAAAAAAAAATGTTGCGCGGTGATGTTGCACGTGTGTATTACATGTTCAGTCTATAGGCACGTAGTGTTTAATTACAAAGTGACATCTGTTTTCGCGGATCCGTGTGAATGGGGATTGTTTTGACAATGTTGTTGCCTGTACGTGAAAAATGCAACAGAAAAACTTTTCCATTTTTAGTACATTGTTCTCATGTTAACATACCCTAAAAGTCATTATATTTTACCAGGGGCTCTTCAAAGATGGAGGATGCTTGTGACTTGTATGGAAGAGCTGCAAACATGTTCAAGATGGCCAAGAACTGGAGTGCTGCAGGAAATGCTTTCTCCCAGGCGGCCCTCCTACACCTGCAGATGCAGAGTAAACACGACGCTGCCACAAACTTCATTGATGCCGGCAATGCCTTTAAAAAATCAGACCCTCAAGAGGCCATAAACTGCCTGAACAGGGCCATTGAGATCTATACAGACATGGGTCGATTTACAATCGCAGCGAAACACCACGTTACCATTGCTGAAGTTTATGAGACTGAACTGGTTGACATTGACAAGGCCATAGCTCACTATGAACAGGCGGCAGACTATTATAAAGGCGAGGAGTCCACAAGTTCTGCCAACAAGTGCCTACTCAAAGTTGCCACCTACGCCGCTCAACTGGAGCGGTACCCTAAAGCCATTGAGATCTATGAACAGGTTGCAACGCATGCAATGGACAGCACTCTGTTGAAATACAGTGCAAAGGACTATTTCTTTAAGGCAGCTCTCTGCCACTTCTGTGTGGACATGCTTAATGCTAAGCTTGCCCTCCAGAAGTATGAGGAAATGTTTCCAGCCTTTTCAGATTCACGCGAATGCAAATTGGTGAAGAAACTTTTAGATGCCTTTGAGGAACAGAATGTGGATGCATATACTGACGCTAACATAGATCGATTAATGGTACACGTCATTACGTCCCCATGCCACGCCGTCCGAATTTCCAGAATTTCACGTATCAACATAAAGTTCATCTTCGTTATGTTAATCATTGCCATGTGTTTGTGTCCTGTTGGTGAAAACTCCCACACGATGTTAATAGTGTGAATAAGGTGTGTACGTACACATTAATGTTTTTGAACGAAGTCTCTTATGCTCATTAAGGCTGCATTATTTCATAATAAATACAGAAAAAACAATAATATTGTGAAATATTATTACAATTTAAAATTTTGGTTTTCTATTTTAATATACTTTAAAATATAATTTATTTCTGTGATGCAAAGCTGAATTTTCAGCATCATTACTCCAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATTTTAAATTGTAATAATATTTCACAATATTATTGTTTTTTCTGTATTTATTATGAAATAAATGCAGCCTTAATGAGCATAAGAGACTTTGTTCAAAAACATTAAAAATAGTAATGTTTCCAAACTTTTGACCGGTAGTGTATGTCTATAATGCACTTTGATAATGCGATTAAA

Function

GO:

id name namespace
GO:0010807 regulation of synaptic vesicle priming biological_process

KEGG:

id description
K15296 NAPA, SNAPA, SEC17; alpha-soluble NSF attachment protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166487 lncRNA downstream 35240 3157813 ~ 3158019 (-) True G146530
TU166338 lncRNA downstream 40155 3152919 ~ 3153104 (-) True G146382
TU166485 lncRNA downstream 47743 3145138 ~ 3145516 (-) True G146528
TU166348 lncRNA downstream 111690 3081248 ~ 3081569 (-) True G146392
TU166456 lncRNA downstream 124602 3067140 ~ 3068657 (-) True G146499
TU166495 lncRNA upstream 26291 3231705 ~ 3231925 (-) True G146538
TU166496 lncRNA upstream 33137 3238551 ~ 3238980 (-) True G146539
TU166329 lncRNA upstream 199792 3405206 ~ 3406196 (-) True G146373
TU166581 lncRNA upstream 217822 3423236 ~ 3423458 (-) True G146616
TU166583 lncRNA upstream 218854 3424268 ~ 3424495 (-) True G146618
CI01000028_03182285_03183550.mRNA mRNA downstream 9510 3182185 ~ 3183749 (-) True CI01000028_03182285_03183550
CI01000028_03144425_03151778.mRNA mRNA downstream 41481 3143583 ~ 3151778 (-) True CI01000028_03144425_03151778
CI01000028_03128741_03141144.mRNA mRNA downstream 50726 3127894 ~ 3142533 (-) False CI01000028_03128741_03141144
CI01000028_03120344_03126349.mRNA mRNA downstream 65980 3120274 ~ 3127279 (-) True CI01000028_03120344_03126349
CI01000028_03083682_03096529.mRNA mRNA downstream 96730 3083600 ~ 3096529 (-) True CI01000028_03083682_03096529
CI01000028_03208231_03214842.mRNA mRNA upstream 2440 3207854 ~ 3214854 (-) True CI01000028_03208231_03214842
CI01000028_03218081_03228755.mRNA mRNA upstream 12351 3217765 ~ 3228755 (-) True CI01000028_03218081_03228755
CI01000028_03250213_03262711.mRNA mRNA upstream 44707 3250121 ~ 3262711 (-) True CI01000028_03250213_03262711
CI01000028_03264758_03280506.mRNA mRNA upstream 59105 3264519 ~ 3280506 (-) True CI01000028_03264758_03280506
CI01000028_03293038_03295110.mRNA mRNA upstream 87624 3293038 ~ 3295880 (-) True CI01000028_03293038_03295110
TU166214 other downstream 746946 2445722 ~ 2446313 (-) True G146272
TU166174 other downstream 1033221 2147378 ~ 2160038 (-) True G146238
TU166103 other downstream 1081994 2097570 ~ 2111265 (-) True G146190
TU164620 other downstream 2717913 475313 ~ 475346 (-) True G144886
TU164586 other downstream 3057471 135392 ~ 135788 (-) False G144855
TU169615 other upstream 3494099 6699513 ~ 6701240 (-) True G149329
TU169770 other upstream 3765343 6971561 ~ 6971711 (-) True G149468
TU169776 other upstream 4024377 7229791 ~ 7232783 (-) True G149474
TU169985 other upstream 4320548 7525962 ~ 7535743 (-) False CI01000028_07527725_07535631
TU169984 other upstream 4320600 7526014 ~ 7535743 (-) True CI01000028_07527725_07535631

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00025922 True 1588 mRNA 0.43 11 NC_007129.7 44673990 ~ 44696815 (+)
bowfin (Amia calva) AMCG00013647 True 2486 mRNA 0.48 11 CM030125.1 38451789 ~ 38458783 (+)
mexican tetra (Astyanax mexicanus) TU217766 True 1449 lncRNA 0.43 11 NC_035914.1 25581172 ~ 25586680 (-)