RNA id: CI01000028_03208231_03214842.mRNA


Basic Information

Item Value
RNA id CI01000028_03208231_03214842.mRNA
length 2021
RNA type mRNA
GC content 0.50
exon number 6
gene id CI01000028_03208231_03214842
representative True

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 3207854 ~ 3214854 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACAAGTTGCAAGATGTCACGCTGGGGACGCAAGAATGTCAAAAAGGCCCCTGAGGTGATTAGGACAGTGACCGAGGGCCTTAAGTCACTCTATCGAAAGAAACTCCTGCCTCTGGAGCAGTACTACTGCTTCCATGACTTCCACTCACCGAGTCTGGAGGACGCCGACTTTGACAACAAACCCATGGTGCTAGTGGTTGGACAGTACTCCACAGGAAAGACCACCTTCATCAAGTATCTGCTGGAACAGGACGTCCCAGGGAGTCGTATAGGGCCGGAGCCCACCACTGACTGCTTCACCGCTATCATGCATGGAGACGTGGAGGGGCTCATTCCTGGAAACGCCCTCATAGTGGATCCCAACAAACCCTTCCGCAAGCTCAACCCCTTCGGAAACACCTTCCTCAACAGATTCCAGTGTGCTCAGCTGCCCAACCAGGTCCTGGAGAGCATCAGCATCATTGACACCCCAGGCATCCTGTCCGGGGCCAAACAGAGAGTGAGTCGAGGATATGACTTCCCAGCAGTTCTCCGCTGGTTTGCTGAGCGTGTGGACCGGATCATTCTTCTCTTTGATGCCCACAAGTTGGAGATCTCGGATGAATTCTCAGAGGCAATCGGGGCCCTCAAGGGCAATGAAGACAAACTCCGTGTTGTGCTGAACAAGGCTGATATGATTGATACCCAGCAGCTCATGCGAGTGTATGGAGCTTTAATGTGGTCTCTGGGGAAAGTGTTTGGTACTCCTGAAGTTCTGAGAGTCTACATCGGGTCCTTCTGGTCTGAACCTCTTATGGTGACCGACAATCGCAAGCTGTTTGAGTTGGAGGAGGAAGATCTGTTTGCTGATATCCAGAATCTGCCACGCAACGCAGCCCTACGCAAACTTAATGACTTGGTCAAGAGGGCTCGCCTTGTGAGGGTACATGCCCATATCATGAGTTACTTGAAGCAAGAGATGCCATCTGTCTTCAGGAAGGACAATAAAAAGAAGAACCTGATCTACCAGCTCCCGGTCATCTTCTCTAAGATTCAGCTACAGTATCATATCTCTCCTGGAGACTTCCCCGATTGTTCCAAGATGCAGGAGCAACTAATGGCACATGACTTCTCCAAGTTTAAAGCCCTGAAGCCCAACCTGATGGCTATGCTGGATGACCTGCTGTCTAACGACATTGCCAAACTGATGCCCCTTCTTAGGCAAGAAGAAATAGAGGCTGGGGTCCAGCTTGGGGTCCAAGGTGGGGCCTTCTTGGGAACCCGTGCCGGACCCTTTATGGAAGGGGACCCCTTTGGCGAGAACGCGGATCAAAATGGTGAGGTGGGTGAGGAAGATGAGGAATGGGTGGTGACAAAGGACAAGCCCAAGTATGACGAGATCTTCTACAACCTAGCACCAAACGAAGGCAAACTAAGTGGCACCAAAGCCAAAGATTGGATGGTGAGCACAAGGCTGCCCAACTCCGTGCTGGGCCGCATCTGGAAGCTCTCGGATGTGGATCGTGATGGCATGCTGGATGACGAGGAGTTTGCCCTGGCCAGCCACCTGATTGAGGTGAAACTGGATGGCCATGGGCTGCCCCCTGAGTTGCCTGCCCGTCTCGTGCCACCATCCAAGCGCCGGCAAAAAGGCTCTGATGCTTAGACAATGCAGCAATGCACCCACGATCAACTGATCCTTGTCCGCACTTCCAGCATGTTGTCCAGCTCCACAGCTGCTGCAATGCATCTCCGTTCACTGTATTTTGGTGCCTTTTTGTACTTTGGTAATTTTGTAACATGCAATTAATGTCTTGCTATGTATTCTTGGTTCAAATGCAACAATGCAAAGATTCCCAGCTGGAAGCCAAAGAGAATTGTGATAAACCAAAGACTGGTCTCAGTAATTTGGAAGGAATGTCGCATCTGTTGCCATTTTTTTCCTGACAGTAAAATCATATGACATCACATCCAGAAATGCTTTACACATGACTCAGTTCATAGAACTTACAATGGCTCCTGTACTAAGGGATAGCAAATAAA

Function

GO:

id name namespace
GO:0055038 recycling endosome membrane cellular_component

KEGG:

id description
K12469 EHD2; EH domain-containing protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166487 lncRNA downstream 49835 3157813 ~ 3158019 (-) True G146530
TU166338 lncRNA downstream 54750 3152919 ~ 3153104 (-) True G146382
TU166485 lncRNA downstream 62338 3145138 ~ 3145516 (-) True G146528
TU166348 lncRNA downstream 126285 3081248 ~ 3081569 (-) True G146392
TU166456 lncRNA downstream 139197 3067140 ~ 3068657 (-) True G146499
TU166495 lncRNA upstream 16851 3231705 ~ 3231925 (-) True G146538
TU166496 lncRNA upstream 23697 3238551 ~ 3238980 (-) True G146539
TU166329 lncRNA upstream 190352 3405206 ~ 3406196 (-) True G146373
TU166581 lncRNA upstream 208382 3423236 ~ 3423458 (-) True G146616
TU166583 lncRNA upstream 209414 3424268 ~ 3424495 (-) True G146618
CI01000028_03194134_03203570.mRNA mRNA downstream 2440 3193259 ~ 3205414 (-) True CI01000028_03194134_03203570
CI01000028_03182285_03183550.mRNA mRNA downstream 24105 3182185 ~ 3183749 (-) True CI01000028_03182285_03183550
CI01000028_03144425_03151778.mRNA mRNA downstream 56076 3143583 ~ 3151778 (-) True CI01000028_03144425_03151778
CI01000028_03128741_03141144.mRNA mRNA downstream 65321 3127894 ~ 3142533 (-) False CI01000028_03128741_03141144
CI01000028_03120344_03126349.mRNA mRNA downstream 80575 3120274 ~ 3127279 (-) True CI01000028_03120344_03126349
CI01000028_03218081_03228755.mRNA mRNA upstream 2911 3217765 ~ 3228755 (-) True CI01000028_03218081_03228755
CI01000028_03250213_03262711.mRNA mRNA upstream 35267 3250121 ~ 3262711 (-) True CI01000028_03250213_03262711
CI01000028_03264758_03280506.mRNA mRNA upstream 49665 3264519 ~ 3280506 (-) True CI01000028_03264758_03280506
CI01000028_03293038_03295110.mRNA mRNA upstream 78184 3293038 ~ 3295880 (-) True CI01000028_03293038_03295110
CI01000028_03307804_03308097.mRNA mRNA upstream 91790 3306644 ~ 3308316 (-) True CI01000028_03307804_03308097
TU166214 other downstream 761541 2445722 ~ 2446313 (-) True G146272
TU166174 other downstream 1047816 2147378 ~ 2160038 (-) True G146238
TU166103 other downstream 1096589 2097570 ~ 2111265 (-) True G146190
TU164620 other downstream 2732508 475313 ~ 475346 (-) True G144886
TU164586 other downstream 3072066 135392 ~ 135788 (-) False G144855
TU169615 other upstream 3484659 6699513 ~ 6701240 (-) True G149329
TU169770 other upstream 3755903 6971561 ~ 6971711 (-) True G149468
TU169776 other upstream 4014937 7229791 ~ 7232783 (-) True G149474
TU169985 other upstream 4311108 7525962 ~ 7535743 (-) False CI01000028_07527725_07535631
TU169984 other upstream 4311160 7526014 ~ 7535743 (-) True CI01000028_07527725_07535631

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00025921 True 3004 mRNA 0.46 7 NC_007129.7 44649804 ~ 44663244 (+)
bowfin (Amia calva) AMCG00013653 True 2106 mRNA 0.58 7 CM030125.1 38407933 ~ 38415648 (-)