RNA id: TU166581


Basic Information

Item Value
RNA id TU166581
length 223
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G146616
representative True

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 3423236 ~ 3423458 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTCACAGATTGGAGAGCCTCTGCCCATCTTTACTTCTGAGAGACTCTGCCTCTCTAAGACATCCCTTTTATAGCTAATCATGTTACAGACCTGATATCAATTAACTTAATTAGTTGCTAGATGTTCTCCCAGCTGAATCTTTTCAAAATTTCTTGCTTTTTCAGCCATTTGTTGCCCCTGTGCCAACTTTTTTGAGACCTGTAGCAGGCATCAAATTTGAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166329 lncRNA downstream 17040 3405206 ~ 3406196 (-) True G146373
TU166496 lncRNA downstream 184256 3238551 ~ 3238980 (-) True G146539
TU166495 lncRNA downstream 191311 3231705 ~ 3231925 (-) True G146538
TU166487 lncRNA downstream 265217 3157813 ~ 3158019 (-) True G146530
TU166338 lncRNA downstream 270132 3152919 ~ 3153104 (-) True G146382
TU166583 lncRNA upstream 810 3424268 ~ 3424495 (-) True G146618
TU166585 lncRNA upstream 2478 3425936 ~ 3426305 (-) True G146620
TU166590 lncRNA upstream 9956 3433414 ~ 3433645 (-) True G146625
TU166646 lncRNA upstream 76399 3499857 ~ 3500109 (-) True G146678
TU166656 lncRNA upstream 91964 3515422 ~ 3515641 (-) True G146688
CI01000028_03307804_03308097.mRNA mRNA downstream 114920 3306644 ~ 3308316 (-) True CI01000028_03307804_03308097
CI01000028_03293038_03295110.mRNA mRNA downstream 127356 3293038 ~ 3295880 (-) True CI01000028_03293038_03295110
CI01000028_03264758_03280506.mRNA mRNA downstream 142730 3264519 ~ 3280506 (-) True CI01000028_03264758_03280506
CI01000028_03250213_03262711.mRNA mRNA downstream 160525 3250121 ~ 3262711 (-) True CI01000028_03250213_03262711
CI01000028_03218081_03228755.mRNA mRNA downstream 194481 3217765 ~ 3228755 (-) True CI01000028_03218081_03228755
CI01000028_03450349_03490905.mRNA mRNA upstream 26317 3449775 ~ 3492294 (-) True CI01000028_03450349_03490905
CI01000028_03526529_03542023.mRNA mRNA upstream 102621 3526079 ~ 3542129 (-) True CI01000028_03526529_03542023
CI01000028_03573572_03578958.mRNA mRNA upstream 148680 3572138 ~ 3579082 (-) True CI01000028_03573572_03578958
CI01000028_03608674_03621881.mRNA mRNA upstream 184140 3607598 ~ 3621909 (-) True CI01000028_03608674_03621881
CI01000028_03628921_03634707.mRNA mRNA upstream 205232 3628690 ~ 3634879 (-) True CI01000028_03628921_03634707
TU166214 other downstream 976923 2445722 ~ 2446313 (-) True G146272
TU166174 other downstream 1263198 2147378 ~ 2160038 (-) True G146238
TU166103 other downstream 1311971 2097570 ~ 2111265 (-) True G146190
TU164620 other downstream 2947890 475313 ~ 475346 (-) True G144886
TU164586 other downstream 3287448 135392 ~ 135788 (-) False G144855
TU169615 other upstream 3276055 6699513 ~ 6701240 (-) True G149329
TU169770 other upstream 3547299 6971561 ~ 6971711 (-) True G149468
TU169776 other upstream 3806333 7229791 ~ 7232783 (-) True G149474
TU169985 other upstream 4102504 7525962 ~ 7535743 (-) False CI01000028_07527725_07535631
TU169984 other upstream 4102556 7526014 ~ 7535743 (-) True CI01000028_07527725_07535631

Expression Profile