RNA id: TU165649


Basic Information

Item Value
RNA id TU165649
length 220
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G145786
representative True

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 2971657 ~ 2971876 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGGAAGGAAACACGATGCATTAAGAGTCGGGGGTGAAAACTTTTGAACAGGATGAAGAGGCCCAAATTTTTCTTATTTCACTTTTTTTTTTTTTTTAGTACTGCCCTTCGGAAGCAACAGAAGATACTTGCATGTTTCCCGGAAGACAAATTAAATACAATTTACCTTGATCTTCAAATTCCAAATGTTTTCACCCCCCATCTATTAACGCATCATGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165647 lncRNA upstream 2243 2969181 ~ 2969414 (+) True G145784
TU165644 lncRNA upstream 9923 2961489 ~ 2961734 (+) True G145781
TU165643 lncRNA upstream 16564 2954769 ~ 2955093 (+) True G145780
TU165641 lncRNA upstream 22138 2949280 ~ 2949519 (+) True G145778
TU165639 lncRNA upstream 25843 2945575 ~ 2945814 (+) True G145776
TU165650 lncRNA downstream 809 2972685 ~ 2973580 (+) True G145787
TU165655 lncRNA downstream 13526 2985402 ~ 2985645 (+) True G145792
TU165710 lncRNA downstream 49115 3020991 ~ 3021220 (+) True G145842
TU165714 lncRNA downstream 51270 3023146 ~ 3023680 (+) False G145843
TU165712 lncRNA downstream 51306 3023182 ~ 3023680 (+) True G145843
CI01000028_02915708_02935354.mRNA mRNA upstream 36227 2915513 ~ 2935430 (+) True CI01000028_02915708_02935354
CI01000028_02738747_02743091.mRNA mRNA upstream 228566 2738483 ~ 2743091 (+) True CI01000028_02738747_02743091
CI01000028_02568775_02584510.mRNA mRNA upstream 386768 2568775 ~ 2584889 (+) True CI01000028_02568775_02584510
CI01000028_02452520_02473148.mRNA mRNA upstream 498056 2452520 ~ 2473601 (+) True CI01000028_02452520_02473148
CI01000028_02299641_02304780.mRNA mRNA upstream 666596 2299402 ~ 2305061 (+) True CI01000028_02299641_02304780
CI01000028_03053581_03067840.mRNA mRNA downstream 81578 3053454 ~ 3068508 (+) True CI01000028_03053581_03067840
CI01000028_03074166_03080440.mRNA mRNA downstream 102163 3074039 ~ 3080902 (+) True CI01000028_03074166_03080440
CI01000028_03097428_03106553.mRNA mRNA downstream 125552 3097428 ~ 3107528 (+) True CI01000028_03097428_03106553
CI01000028_03155827_03157194.mRNA mRNA downstream 182125 3154001 ~ 3157194 (+) True CI01000028_03155827_03157194
CI01000028_03232374_03235527.mRNA mRNA downstream 260302 3232178 ~ 3235586 (+) True CI01000028_03232374_03235527
TU164196 other upstream 2449726 492158 ~ 521931 (+) True G144526
TU165711 other downstream 51270 3023146 ~ 3024220 (+) False G145843
TU167491 other downstream 1986827 4958703 ~ 4989838 (+) True G147462
TU167681 other downstream 2244214 5216090 ~ 5216611 (+) True G147636
TU167757 other downstream 2468578 5440454 ~ 5453610 (+) True G147693
TU169380 other downstream 4498016 7469892 ~ 7470700 (+) True CI01000028_07470324_07471346

Expression Profile