RNA id: CI01000029_01005595_01007028.mRNA


Basic Information

Item Value
RNA id CI01000029_01005595_01007028.mRNA
length 749
RNA type mRNA
GC content 0.45
exon number 2
gene id CI01000029_01005595_01007028
representative False

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 1005595 ~ 1007192 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCAGGCCTCCGACGGTGATAGGCCAGTTCCACACGCTGTTTTTCGGCTCTGTGCGTACGTTTTTCCTTGGAGTCCTTGGATTCGCCGTCTATGGAAATGAGGCCCTCCACTTCAGCTGTGATCCGGACAAAAGGGAATTAAACCTTTACTGTTACAACCAGTTCAGGCCTATAACACCTCAGGTATTCTGGGCGTTGCAGCTAGTCTCTGTCTTGGTACCTGGAGCTGTATTCCATCTTTATGCTGCCTGTAAAAATATAGACCAGGAGGAGATCCTTCAGCGGCCGATGTCCACAGTCTTCTACATCATCTCTGTCCTGTTGAGAATAATTCTGGAAGTCTTAGCATTTTGGCTTCAGAGCCACCTCTTTGGGTTCCTGGTTGATCCTATTTATATGTGCGATGCCAGTGCCCTCGCGAAGATCTTCAGCATCTCAAAGTGTATGGTCCCTGAACACTTCGAGAAGACTATCTTCCTCAGTGCGATGTACACCTTTACCATCATCACCATACTCCTCTGTATCGCTGAGATTTTTGAGATTCTGTTCCGAAGACTTGGCTATTTAAACCAGCCAGTGTCTTGAGAATTTAGAAAACATTGTTTGTTTTTATGTCTTCTATGGGTCTCTGAATGACAGACAGGACATAAACCCACATACCTCTGGACTTTCTGATGGTAGACACAGAAAGACATGTTTTTAACTGGACAATTTATTATTCCTTTTCTGGAAAACACAAAACAAGCCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172387 lncRNA upstream 252816 750049 ~ 750982 (+) True G151759
TU172386 lncRNA upstream 253018 749986 ~ 750982 (+) False G151759
TU172385 lncRNA upstream 253018 750049 ~ 750982 (+) False G151759
TU172384 lncRNA upstream 335832 669485 ~ 669763 (+) True G151758
TU172352 lncRNA upstream 361384 643126 ~ 644211 (+) True CI01000029_00643229_00643768
TU172620 lncRNA downstream 355759 1362951 ~ 1363894 (+) True G151977
TU172625 lncRNA downstream 437720 1444912 ~ 1445191 (+) True G151982
TU172634 lncRNA downstream 449015 1456207 ~ 1456417 (+) True G151991
TU172639 lncRNA downstream 454812 1462004 ~ 1462313 (+) True G151996
TU172640 lncRNA downstream 458019 1465211 ~ 1465488 (+) True G151997
CI01000029_00754131_00762051.mRNA mRNA upstream 243246 753841 ~ 762349 (+) True CI01000029_00754131_00762051
CI01000029_00751587_00751771.mRNA mRNA upstream 253600 751587 ~ 751995 (+) False CI01000029_00751587_00751771
CI01000029_00718512_00738422.mRNA mRNA upstream 267003 717495 ~ 738592 (+) True CI01000029_00718512_00738422
CI01000029_00711035_00714680.mRNA mRNA upstream 290647 710952 ~ 714948 (+) True CI01000029_00711035_00714680
CI01000029_00645958_00649352.mRNA mRNA upstream 355671 645958 ~ 649924 (+) True CI01000029_00645958_00649352
CI01000029_01007732_01029115.mRNA mRNA downstream 540 1007732 ~ 1029336 (+) False CI01000029_01007732_01029115
CI01000029_01055143_01086742.mRNA mRNA downstream 47951 1055143 ~ 1087711 (+) True CI01000029_01055143_01086742
CI01000029_01165267_01171855.mRNA mRNA downstream 157662 1164854 ~ 1173919 (+) True CI01000029_01165267_01171855
CI01000029_01206589_01231131.mRNA mRNA downstream 197271 1204463 ~ 1231158 (+) True CI01000029_01206589_01231131
CI01000029_01259557_01263294.mRNA mRNA downstream 252064 1259256 ~ 1263294 (+) True CI01000029_01259557_01263294
TU172071 other upstream 633673 366580 ~ 371922 (+) False G151495
TU172069 other upstream 633806 366580 ~ 371789 (+) False G151495
TU172068 other upstream 633871 366541 ~ 371724 (+) False G151495
TU172072 other upstream 633871 366580 ~ 371724 (+) False G151495
TU172075 other upstream 633871 366580 ~ 371724 (+) True G151495
TU172657 other downstream 519594 1526786 ~ 1527899 (+) True CI01000029_01526863_01527414
TU173161 other downstream 1754402 2761594 ~ 2762939 (+) True G152451
TU174291 other downstream 2537933 3545125 ~ 3562004 (+) True G153475
TU174646 other downstream 3726397 4733589 ~ 4740107 (+) True G153790
TU175511 other downstream 4263828 5271020 ~ 5271535 (+) True G154587

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00034801 True 1717 mRNA 0.37 3 NC_007131.7 37295006 ~ 37298274 (+)