RNA id: CI01000029_09058596_09061088.mRNA


Basic Information

Item Value
RNA id CI01000029_09058596_09061088.mRNA
length 919
RNA type mRNA
GC content 0.49
exon number 6
gene id CI01000029_09058596_09061088
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 9058596 ~ 9061323 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGCGGCGGATCCAGCGCGAGTGTGGAACGAGGAGCAGCTCAAGACTGAAGAAGTGGCTAAAAAAGAGCTCATCAAATTCATCCAGGACAACGCAGCACACTCGTTTCTAGCTGAACACAAACTTCTTGGAAACATCAAGAATGTGGCAAAGACAGCCAAAAAAGAGCAGCTTATTGAAGCGTATAACCAGCTGTTTGAGAGCAAGAGGTTTAAGGGCACAGAAGTGGAGTTGGTGACAGAAGAGGTTCAAGCTGTGAAAATCCACGACACTCCCAAAGAAAGCAAGATAGAGGCTGTGGATGAGGGTCCTCCGAAGTTCATGAAGTCCATCCTGAAGAAAGGAGACAAGACCAACTTCCCCAAGAAGGGCGACACGGTGAGCTGCTGGTACAGCGGGACGCTGGAGGACGGGACCGTCTTCGACACCAACATCCCCGCATCTGCTAAAAAGAAGAAACAGTCCAAACCGCTGAGCTTCAAGGTTGGGTTGGGCCGAGTGATCCGAGGGTGGGACGAAGGTCTGCTGACGATGAGTAAAGGCGAGACGGCGAGGCTGGAGATCGAGTCGGACTGGGCGTACGGGAGGAAAGGCCTTCCAGATGCAAAGTATCCTTCATTAAACCTCTCTCTGATTGATATTTTTGCAAGTGTTGATTATTTGATCAGGTTCCTCTGGCCTTAACCATCATTACCCAGAATCCCACCCAACGCAAAGCTGATATTCGAGGTGGAGCTGGTCTCTATTGATTAGTCATTTCAATCGTGACGTCTCGACCGACAGGAACCACACGACGAGCGCTGGCGGCAGTTTGGAGGGAACGTTTGTTTGAAAGGATGAAACATGTTCATTATTATTACATGTTGTTCAGTCTGACAGAGAAGTTTTCTGACTATTTTTGCATGGTTGTAAAGCTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177097 lncRNA upstream 177805 8880448 ~ 8880791 (+) True G155980
TU177080 lncRNA upstream 208004 8850127 ~ 8850592 (+) True G155965
TU177065 lncRNA upstream 220704 8823968 ~ 8837892 (+) False G155953
TU177126 lncRNA downstream 1415 9062738 ~ 9064541 (+) True G156007
TU177153 lncRNA downstream 34608 9095931 ~ 9096174 (+) False CI01000029_09091229_09095666
TU177138 lncRNA downstream 35055 9096378 ~ 9101802 (+) True CI01000029_09091229_09095666
TU177211 lncRNA downstream 55309 9116632 ~ 9116923 (+) True G156087
TU177166 lncRNA downstream 56393 9117716 ~ 9118633 (+) True G156043
CI01000029_08990637_09003719.mRNA mRNA upstream 54817 8990557 ~ 9003779 (+) True CI01000029_08990637_09003719
CI01000029_08915550_08920146.mRNA mRNA upstream 138238 8914423 ~ 8920358 (+) True CI01000029_08915550_08920146
CI01000029_08759743_08761002.mRNA mRNA upstream 297402 8759743 ~ 8761194 (+) False CI01000029_08759743_08761002
CI01000029_08743604_08749941.mRNA mRNA upstream 308259 8740734 ~ 8750337 (+) True CI01000029_08743604_08749941
CI01000029_08654610_08655443.mRNA mRNA upstream 402046 8652582 ~ 8656550 (+) True CI01000029_08654610_08655443
CI01000029_09079841_09080368.mRNA mRNA downstream 17670 9078993 ~ 9080635 (+) True CI01000029_09079841_09080368
CI01000029_09091229_09095666.mRNA mRNA downstream 29780 9091103 ~ 9097013 (+) False CI01000029_09091229_09095666
CI01000029_09132920_09139682.mRNA mRNA downstream 71247 9132570 ~ 9140319 (+) True CI01000029_09132920_09139682
CI01000029_09142383_09143514.mRNA mRNA downstream 81008 9142331 ~ 9143528 (+) True CI01000029_09142383_09143514
CI01000029_09146276_09147817.mRNA mRNA downstream 84901 9146224 ~ 9147831 (+) True CI01000029_09146276_09147817
TU176707 other upstream 1126419 7931480 ~ 7932177 (+) True G155627
TU176602 other upstream 1420762 7634833 ~ 7637834 (+) True G155522
TU176307 other upstream 2151164 6906188 ~ 6907432 (+) False CI01000029_06906861_06907157
TU176095 other upstream 2568302 6431535 ~ 6490294 (+) False G155083

Expression Profile