RNA id: TU175042


Basic Information

Item Value
RNA id TU175042
length 640
lncRNA type antisense_over
GC content 0.45
exon number 5
gene id G154154
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 4098970 ~ 4101128 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGTGAAGCCCTTTTGTCTGGTGTTGTGACGTTTGCAAGTTTCTGAGGCACAGTGGTGACCCTCTGACTCCTTCTGGGAGATCTGGAGGCAAGAGGCCGCTCCTCATCCTCACATGACAGTCGACTCCTCTTTGAGCTCCTTGTTGGCGTTTCCACAGAAACGTAACTGCTCCGTCCCCTGGTGGTCTGTGATTTTGGTAAATTGTTCTTCTCATTTAGAGTATTAGACAAACTTCCTTCTCTTAAACTTACAAGAGCTTTAGCTGAAGAGCTCTCGTCTAACAGCTGCTCGAGCTCCGCCATCTTGAATTAGCCGCGCCGGTTTTTCAAAGGCCGAGTGCCGCGATGCATTGTGGGACAGAGAGGGCAGTTCAAACAAACACTCCACTGTCTGCGCTCACAAACTATTAAAACATTTTAGATTTCAGATGCATGGTATAGAAAATGAGAATCTTTAGATACATTAGGACTGATCAGGCAAGTGTTTTTATTTTTAGACAGTTTCTTATTTTCATAAACAGGTTTGAAAAGGTTTAGCTTCGGAATCTGATCCCCATAGGACTAGGCATTAGGAGAATTTGCCATAGTTCAGCGGTTCTCAACCAGGGGACCGGGACACATTAGAGGACCTCAAGATGAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU175040 lncRNA downstream 22855 4075888 ~ 4076115 (-) True G154152
TU175039 lncRNA downstream 27052 4071691 ~ 4071918 (-) True CI01000029_04071708_04075046
TU175037 lncRNA downstream 27730 4071037 ~ 4071240 (-) False CI01000029_04071708_04075046
TU175035 lncRNA downstream 28529 4069253 ~ 4070441 (-) True G154148
TU175034 lncRNA downstream 30148 4068588 ~ 4068822 (-) True G154147
TU175057 lncRNA upstream 134648 4235776 ~ 4236640 (-) True G154169
TU175058 lncRNA upstream 135634 4236762 ~ 4237074 (-) True G154170
TU175059 lncRNA upstream 138079 4239207 ~ 4239437 (-) True G154171
TU175060 lncRNA upstream 140577 4241705 ~ 4241998 (-) True G154172
TU175088 lncRNA upstream 294291 4395419 ~ 4395750 (-) True G154198
CI01000029_04071708_04075046.mRNA mRNA downstream 23671 4070724 ~ 4075299 (-) False CI01000029_04071708_04075046
CI01000029_04046704_04057783.mRNA mRNA downstream 40714 4046646 ~ 4058256 (-) True CI01000029_04046704_04057783
CI01000029_04017725_04032225.mRNA mRNA downstream 66745 4017193 ~ 4032225 (-) True CI01000029_04017725_04032225
CI01000029_03988871_03998768.mRNA mRNA downstream 100202 3988590 ~ 3998768 (-) True CI01000029_03988871_03998768
CI01000029_03949550_03958610.mRNA mRNA downstream 140226 3949306 ~ 3958744 (-) True CI01000029_03949550_03958610
CI01000029_04108560_04110587.mRNA mRNA upstream 7270 4108398 ~ 4110871 (-) True CI01000029_04108560_04110587
CI01000029_04115189_04121331.mRNA mRNA upstream 14035 4115163 ~ 4121331 (-) True CI01000029_04115189_04121331
CI01000029_04122433_04123725.mRNA mRNA upstream 21080 4122208 ~ 4123725 (-) True CI01000029_04122433_04123725
CI01000029_04125071_04135324.mRNA mRNA upstream 23613 4124741 ~ 4135374 (-) True CI01000029_04125071_04135324
CI01000029_04138798_04141675.mRNA mRNA upstream 37670 4138798 ~ 4141675 (-) True CI01000029_04138798_04141675
TU174823 other downstream 391718 3706223 ~ 3707252 (-) True CI01000029_03698769_03707177
TU174756 other downstream 812416 3248777 ~ 3286554 (-) True G153891
TU173923 other downstream 1506168 2592459 ~ 2592802 (-) True G153138
TU173481 other downstream 2804847 1292249 ~ 1294123 (-) True CI01000029_01293143_01293964
TU175091 other upstream 359215 4472400 ~ 4477212 (-) True G154201
TU175317 other upstream 884980 4986108 ~ 4987425 (-) False G154415
TU175314 other upstream 885057 4986185 ~ 4987425 (-) True G154415
TU177741 other upstream 3069239 7170367 ~ 7170951 (-) False G156542
TU177684 other upstream 3265199 7366327 ~ 7369547 (-) False G156495

Expression Profile