RNA id: TU175231


Basic Information

Item Value
RNA id TU175231
length 539
lncRNA type antisense_over
GC content 0.49
exon number 4
gene id G154334
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 5017435 ~ 5018652 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCAGAAATGAGGCAATTGTGTTTTCCCTGATCTTGTGATGCCTGGCAGCATGTGTGCTCCCTGCTCCTCTGTGTCCAACAACCAAAGGGCTCCTTTTCTTCCAGTATTTGGTGAAAGACTGACTCATGTCACATTGAAGGCCTTGGATAGGACGCGTCACCAGTCTGTCTGGCGTTTCGACTCATGATGGGCAGGGTGACTACACCCAAATCTTTTCCGTTCTCCACAAAAGAGGATGACAAGAGGCATGCGGTGCCTACGTGGCCTGGATGAGCATCACCCTGAACCACAGGTTCACTCAAGTCCTCCTCAAAGAACTCAAAGGTGAGCTCTAGGTTGTCAGGGTCCATGGTGTGAATAATGTATTCTGTCCACTTGGAGGGTTCCAGAGCGTATCCACATTCTGGCTGGGAATGACGAGACTTATATCCGCCATCACTGATCATACTGATCTCCAGCGTAGTGGTCATCTTATGCCATGATGAAGGGCTTTCTTCTTCTTCGTCGTCTTCTTCTTCAATTCCTTCCAGCATCAACTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU175275 lncRNA upstream 11474 5005670 ~ 5005961 (+) True G154378
TU175238 lncRNA upstream 30037 4986762 ~ 4987398 (+) True G154341
TU175269 lncRNA upstream 39912 4977231 ~ 4977523 (+) True G154372
TU175268 lncRNA upstream 40449 4976728 ~ 4976986 (+) True G154371
TU175265 lncRNA upstream 43909 4973178 ~ 4973526 (+) True G154368
TU175239 lncRNA downstream 1096 5019748 ~ 5023290 (+) True G154342
TU175232 lncRNA downstream 6229 5024881 ~ 5025182 (+) True G154335
TU175237 lncRNA downstream 30334 5048986 ~ 5049387 (+) True G154340
TU175295 lncRNA downstream 42402 5061054 ~ 5061415 (+) True G154398
TU175510 lncRNA downstream 251480 5270132 ~ 5270380 (+) True G154586
CI01000029_04981453_04995255.mRNA mRNA upstream 21773 4981145 ~ 4995662 (+) True CI01000029_04981453_04995255
CI01000029_04590418_04605290.mRNA mRNA upstream 411741 4590284 ~ 4605694 (+) True CI01000029_04590418_04605290
CI01000029_04521600_04521771.mRNA mRNA upstream 494684 4521600 ~ 4522751 (+) True CI01000029_04521600_04521771
CI01000029_04478628_04483582.mRNA mRNA upstream 533834 4476420 ~ 4483601 (+) False CI01000029_04478628_04483582
CI01000029_04409794_04419021.mRNA mRNA upstream 598414 4409794 ~ 4419021 (+) True CI01000029_04409794_04419021
CI01000029_05041887_05044363.mRNA mRNA downstream 22345 5040997 ~ 5045063 (+) True CI01000029_05041887_05044363
CI01000029_05104260_05107686.mRNA mRNA downstream 84567 5103219 ~ 5107804 (+) True CI01000029_05104260_05107686
CI01000029_05232703_05233677.mRNA mRNA downstream 211540 5230192 ~ 5234070 (+) True CI01000029_05232703_05233677
CI01000029_05267765_05268790.mRNA mRNA downstream 249038 5267690 ~ 5268884 (+) True CI01000029_05267765_05268790
CI01000029_05274996_05279739.mRNA mRNA downstream 256172 5274824 ~ 5279770 (+) True CI01000029_05274996_05279739
TU174646 other upstream 277328 4733589 ~ 4740107 (+) True G153790
TU174291 other upstream 1455431 3545125 ~ 3562004 (+) True G153475
TU173161 other upstream 2254496 2761594 ~ 2762939 (+) True G152451
TU172657 other upstream 3489536 1526786 ~ 1527899 (+) True CI01000029_01526863_01527414
TU172075 other upstream 4645711 366580 ~ 371724 (+) True G151495
TU175511 other downstream 252368 5271020 ~ 5271535 (+) True G154587
TU175455 other downstream 438589 5457241 ~ 5457472 (+) True G154531
TU176089 other downstream 1264033 6282685 ~ 6288398 (+) True G155079
TU176095 other downstream 1412883 6431535 ~ 6490294 (+) False G155083
TU176099 other downstream 1412883 6431535 ~ 6490294 (+) True G155083

Expression Profile