RNA id: TU175701


Basic Information

Item Value
RNA id TU175701
length 2109
lncRNA type sense_over
GC content 0.42
exon number 6
gene id G154742
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 5728357 ~ 5761260 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTAACTTAAACAAGCTTATTTTTAATGGATCTGCAAAATCGTTTGAATTTCCAAAGAGAACGCTCCCCTCCCTGACACGTATCTGGACTAGAAGAGATACTTCCTGTGAATTACAAACATGGCAAAACTTACAAAAGACCCCAAAAACCCAAAGAAACCAGCATGCAGGAGAGAATGAATAACTGAGTGAAGGGGAAAACAAAAACAAAACAAAAATACATCGAGGAGATTCATAAAACAAGTCATTCTGAAAAATAAAGAACAAACTAAATTTAAAAACAAAACAAAAAGTATATATAATGCCATTCTCTTCTGAGCAAAACGGTTGAATCCAGATGGTTCCACTCGGGCGTGTGTGGGGTTGAGTTAGCAGGTCAAGCAGAGAGGAGAGGACCAGTGTGTGTGTGTGTGTGTGTGTGTGTGTATATGTGTGTGTGTGTGTGTGTAACTGTTACAGAAAAGTGGTGTTTAAATGTGTTTGGGGGGGGAATGAGCTCTAAGGCTCTACATTAAGGCACCGGACGAAAGAAATCAAATCAAAGAAAAAAAGAAAAAAAAAATTAATAATAAAACAGCTAGAGAAGATCTCTCACACTAACACACAACACTAACCCCAAAACACTGGACAAAAGTCTTCATCTAGGATGTCATACTGAACGCTACGCCGCTCCTCTGTGCCGACGGACAGCGTCTCCAGGTCCACCGACGCTCTTTATGTAGTGGTGAATGCATGTTTGATTTTCATTTAAATTCATTTCATTCTTTCTTTCTTTAAACTTTAAAATAAGTATGAAGAAACATGAAATGACTTTCTCTTTACATTTCTTTTTTTTTTTTCAGAAATAAAATAATGTCAGCAAGCAGTCGTGAGTGTGAGAAAAGTTAGAGATGTGTTTTACAGAGAATCCCATGAGAAGGACAGAACGGAAGAGTGTTAGACAGAAACGAGGGATGAGTGAGTGAAAGAGAGAAAAAGAGGGATATAGAAGAACAGATTGTGTGTGTGTGTTTGTGTAAAGTGTGTGAGCAACTGTGTGTGTCTGTTCAACTGCAGCACTTGGTCTTCCATCCTGTGACTCCGCCTCCAGTGCTGATGTCCACGTTTTCACTGTTGGGCTCTTTTACGGGCGTCTTTCTGAGAATGTCTTCTGCTAACGTGAGGAACGCCTTCTCGATGTTGATGTTGGCTTTTGCACTTGTCTCAAAGAAGCGAATCCCGTGTTCTCTGGCGATCTGTTCCCCCTTGGCTTTTGGTACGATACGTTTGTCCTCCATATCACACTTGTTGCCTAGCAGCATCCTCTCCACATCCTCATTAGCATGCTCGTCAATGTTTCTGAGCCATTTGCTGATGTTTTCGAAGCTCTTGGCGTTGGTGATGTCATATACGAGCATGATTCCCATGGCTCCTCTGTAGTAAGAGGTAGTGATGGTGTGAAACCGTTCCTGCCCCGCTGTATCCCATATCTGTAGCTTTATCTTCTTTCCTTGCAATTCAACTGTTTTGATCTTAAAATCGATTCCTATGGTGGAGATAAAGGTGGTGTTGAAGGCGTCATCAGAGAATCGGAACAGCACGCAGGTCTTTCCCACCCCAGAATCACCAATCAAAAGCAGTTTAAAGAGCAGATCATATGTCTTCTTCGCCATCTGAGCTCTTATAAACACACACTGATGAGAAGCGGATAGAGAATAACTGTGTGTTAAAGGGAAAGTGTGTGTGTGTTGTCAGAAAACACACACCGGACAGTCTCTTCGCAGCTGAATTGCGTTGATTTCCACTGTAGAGTCTTTTTAAATTCCTAAAGAGATATTTAATATGTGTGTTTCCTCTCAAAGTGTTCGTTTGGTGTTTTTAATGTCTCTGTCTTTCTTTCTCTCACACACTGTCGGGACAAAATGGCTCCTCCGCCCGACTCTCTTTCTTCAAACTACACCAGCGATCTGATTCAAATGAAAGCTATTCCGCTTCATCCCAGCGATGCAGAACCGCGTAGATCTCGTTTGACAGCTGGTTCCGAAAAGACAGTCCTTACCGGGTCCGTTTGTGGAGTTAAGAAGAGGACAAACACACCGACGACCGACCAACCGCCGTCGCCTTCGAATGGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU175823 lncRNA downstream 50235 5690767 ~ 5691221 (-) True G154853
TU175723 lncRNA downstream 227370 5513150 ~ 5514086 (-) True G154761
TU175787 lncRNA downstream 268952 5471975 ~ 5472504 (-) True G154821
TU175760 lncRNA downstream 288905 5451989 ~ 5452551 (-) True G154798
TU175784 lncRNA downstream 300134 5441002 ~ 5441322 (-) True G154818
TU175861 lncRNA upstream 72539 5833799 ~ 5834024 (-) True G154890
TU175868 lncRNA upstream 83145 5844405 ~ 5844828 (-) False G154894
TU175867 lncRNA upstream 83172 5844432 ~ 5844730 (-) False G154894
TU175866 lncRNA upstream 83233 5844493 ~ 5844730 (-) True G154894
TU175871 lncRNA upstream 88010 5849270 ~ 5849499 (-) True G154896
CI01000029_05724774_05734931.mRNA mRNA downstream 6525 5724774 ~ 5734931 (-) True CI01000029_05724774_05734931
CI01000029_05716319_05720037.mRNA mRNA downstream 21419 5716110 ~ 5720037 (-) True CI01000029_05716319_05720037
CI01000029_05675041_05691687.mRNA mRNA downstream 49769 5674054 ~ 5691687 (-) True CI01000029_05675041_05691687
CI01000029_05664917_05665909.mRNA mRNA downstream 75547 5664303 ~ 5665909 (-) True CI01000029_05664917_05665909
CI01000029_05614085_05663509.mRNA mRNA downstream 77424 5614018 ~ 5664032 (-) True CI01000029_05614085_05663509
CI01000029_05873343_05884423.mRNA mRNA upstream 111621 5872881 ~ 5884790 (-) True CI01000029_05873343_05884423
CI01000029_05889701_05899499.mRNA mRNA upstream 127841 5889101 ~ 5899772 (-) True CI01000029_05889701_05899499
CI01000029_06005746_06011523.mRNA mRNA upstream 243876 6005136 ~ 6011523 (-) True CI01000029_06005746_06011523
CI01000029_06027418_06046659.mRNA mRNA upstream 265084 6026344 ~ 6047017 (-) True CI01000029_06027418_06046659
CI01000029_06051592_06058664.mRNA mRNA upstream 289287 6050547 ~ 6059138 (-) True CI01000029_06051592_06058664
TU175317 other downstream 754031 4986108 ~ 4987425 (-) False G154415
TU175314 other downstream 754031 4986185 ~ 4987425 (-) True G154415
TU175091 other downstream 1264244 4472400 ~ 4477212 (-) True G154201
TU174823 other downstream 2034204 3706223 ~ 3707252 (-) True CI01000029_03698769_03707177
TU174756 other downstream 2454902 3248777 ~ 3286554 (-) True G153891
TU177741 other upstream 1409107 7170367 ~ 7170951 (-) False G156542
TU177684 other upstream 1605067 7366327 ~ 7369547 (-) False G156495
TU177685 other upstream 1605067 7366327 ~ 7369547 (-) False G156495

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00035010 True 1294 mRNA 0.46 6 NC_007131.7 47434709 ~ 47471595 (+)