RNA id: CI01000029_05614085_05663509.mRNA


Basic Information

Item Value
RNA id CI01000029_05614085_05663509.mRNA
length 3344
RNA type mRNA
GC content 0.51
exon number 23
gene id CI01000029_05614085_05663509
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 5614018 ~ 5664032 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAGCGTCACCGAACGCATCTTGACGCGACGCGTCCGTGTTAAACCGCAAAGACAAACTGGCAGAGATTCAAACGCCCGCCATGTTACAGACTCTCCACATTAAACAACAAACTGGCTGCTGTTTGTCTTCTGTGGACACAAATTTTGTCTTTTTCACTGACTGTCGTGATATGATAAGACACTCTTGCCTCATTTATACCAAGGGATAATAAGGGAAACATTACAGACTCTTGTTTCCACTTGTGCTGTTATAAGATGTGTCGCTTTTATAGACTTTAACCAGAAAAATAATAAGATTTCATACTATCATACACTATTAATGTATAAATATGCATTTTTCATACTCCAGAAATTAATACGGTCTTTGTTGTGTTTGGTTTTGCAGGGAGAAGAAGGATTTGATGGTCTGAAGGTGGATCAGTTTCATCGCCACAAAAGTCTCTCAGCATTTTAATGTCTTTTATTTCATTTGTGTTGATTTCAAATGCATCGATCAGGCCTGTAGTGTGTTTTTGTTTCATCATGCCTCTCGATCTGGACTGTGACGCAGCGGCAAACAAAACGTTTAATGGCCGTTCAGTTATTATAAATCTGTTTTCAGCGATTGGACCAGCGCACAGTCAGAGTAGTTTATGTACGCTGGCCTTACAGTCATCAGGAAAGCCTTGTCTAACCGATTTATGTGGCTTGAAGTCATGTGAGAGTCCAGAGGCGGAACAGGAAGTGTGTGAGGTCACACATGAAGAGAGAGTGACTGACACACCAACACGAAGAGTCGGACGACCCGCTCGAAAACGCAAAGCACCAGGATCACACTGTCATGATCTTCTGATAGCAAAGGCATCTGTTGTTGAATGTGGCAGGATTGTTAAGCTGCACAAGCAAGGGCTCTCGCAATGCGCCATTGCTGCCGAGGTTGGACGAGACAACGCTGCAGTTCACAACACCCGCCTGACGAAGGACTTCTTCCAGGAGAATAACGTCGCTCTTTTTGATCATCCTGCATGTTCCCCTGATCTAAATCCCATTGAGAAAGTTTGGGGATGGATGGCCAGAGAAGTTTACAAAAACAGGTACTATTCTATAATATGTAAACACATTTATCATATCAATGGACTGGTGGTGCATTATCACTTTCAAGTTGTGAAATTGGATAGTTGTGGGCGTGTAATAGAGGGTGTGGCCTGTATAAAGCAGGCGGGGTGTAACGGTGAAGCAGACAGTCTGGAGCGGAACGACTCCTCCCCTGACTCCACCCACAGGAACAGCACAGACACGCCCCCCGGAGCAGACGAAGACTCTGCCCCCTCCACTCCACGGAAGAAACGAGGCCGACGGAAACTCGAGCACCCGGAGCGACACGTGGAGGAGGACGACACCAGCAGCGACACCAGCAGAGCAGAGGAGGAGAAGGCCCATCTGGTGCCCACCATGAGTGACACAATGGACGACCAATCAGCAGTGAGTTCTCAGAAGGAGGAGGAGGAGCCAGCCATCAACCTCCCATCCACACCTACACCTCAGCAGCAGCACACTGACCCCGCCTCCCCAACGGTTGCCACGACGCCTGAGGCGCCTCCTGTCGCCTGCGGTAACAAAGTGATGACAAGGTCCTCAGAGATGGATCAGGAATATGAGGATGGCCGTGGGTTCGGGATCGGAGAGCTCATCTGGGGAAAGTTACGGGGATTCTCCTGGTGGCCCGGCCGGATCGTGTCGTGGTGGATGACGGGTCGCAGTCGGGCCGCTGAAGGAACCCGCTGGGTCATGTGGTTTGGAGATGGCAAATTCTCAGTGACGGCGAGTACGCGTGCAGGTAAACCGTTCCCTGTATGTGTGTCCACCGATGACTCAGACTCGGTGAAGGGTGTAGAACTGCAGACGCGACAGATGATTGAATGGGCCAGCGCTGGGTTCCTCCCCTCCGGTGCCAAAGGCCTGGAGCCGCCACCAGCGGAGCGGAATCCTTATACTGAGGTGTATCCAGAGATGTGGGTGGAGCCTGAGGCTGCTGCGTACACAGCTCCGCCCCCTGCCAAGAAACCCAGGAAGAACAGTGTTGAGAAACCCAAAATTAAAGAGATTATAGATGAAGGAACCCGAGAGAGACTCGTGTATGAAGTCAGACAGAAGTGTCGCAATCTAGAAGATATCTGTATTTCCTGTGGAAGTCAGAACGTATCACTTGAACATCCTCTGTTTATTGGAGCCATGTGCCAGAGCTGCAAGAACTGTTTCCTGGAGTGCGCGTATCAGTACGACGATGACGGTTATCAGTCGTACTGCACCATCTGCTGTGGAGGAAGAGAAGTGCTCATGTGCGGGAACAACAACTGCTGCAGGTGTTTCTGTGTGGAGTGTGTAGATCTGTTAGTCGGGGCCGGTTCGGCACAGGCCGCTATCCGTGAAGACCCCTGGAACTGCTACATGTGCTGCAGCAGGAACGTCTTCGGCCTTCTGAGGCGCAGAGACGACTGGACCTCACGACTGCAGCTGTTCTTCGCCAACAACCACGACCAGGACTTTGAACCACCAAGGTTGTATTCTCCAGTAGCGGCTGAGAAGAGGCAGCCAATCAGAGTGCTTTCTTTATTTGATGGCATCGCTACAGGGCTGCTGGTGCTAAAGGATCTGGGTATTCAGGTGGCGCGGTATGTGGCATCAGAGGTGTGTGAAGACTCCATCACGGTGGGGATGGTGCGACACCCGGAAGGGATCATTTATGTGGGCGATGTGAGGAACGTCACACGCAAGCATATTCAGGAGTGGGGGCCTTTTGATCTTGTGATCGGTGGGAGCCCCTGCAACGATCTGTCCATCGTAAACCCTGCCAGGAAAGGCCTCTACGAGGGCACCGGGCGTCTGTTTTTTGAGTTCTACCGGCTGCTTCACGAAGCGCGACCCAAAGACGGAGACGACCGACCGTTCTTCTGGCTGTTTGAAAATGTTGTTGCCATGGGAGTCAGTGACAAAAGGGACATCTCGCGCTTTCTGGAGTGTAATCCAGTAATGATCGACGCTAAGGAGGTGTCAGCCGCACACAGAGCTCGATACTTCTGGGGCAACTTACCTGGAATGAACCGGCCACTGACTGCCATGGCAAATGATAAACTCGACCTGCAAGACTGTCTGGAGCATGGACGCACAGCTAAGTTCGGCAAAGTGCGAACCATCACAACTCGCTCAAACTCCATAAAACAGGGCAAAGACCAGCACTATCCCGTCTATATGAACAATAAAGAGGATATCCTGTGGTGCACCGAGATGGAGAGGTGAGGGCGGTCACATGACCTGTGCTTCTAATAATATTTCATCCCAAAGTTGAAAGAAAGTATAAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU175723 lncRNA downstream 99932 5513150 ~ 5514086 (-) True G154761
TU175787 lncRNA downstream 141514 5471975 ~ 5472504 (-) True G154821
TU175760 lncRNA downstream 161467 5451989 ~ 5452551 (-) True G154798
TU175784 lncRNA downstream 172696 5441002 ~ 5441322 (-) True G154818
TU175781 lncRNA downstream 175937 5437716 ~ 5438081 (-) True G154815
TU175823 lncRNA upstream 26735 5690767 ~ 5691221 (-) True G154853
TU175700 lncRNA upstream 64325 5728357 ~ 5761260 (-) False G154742
TU175701 lncRNA upstream 77424 5741456 ~ 5761260 (-) True G154742
TU175831 lncRNA upstream 81982 5746014 ~ 5748127 (-) False G154860
TU175830 lncRNA upstream 82927 5746959 ~ 5748127 (-) True G154860
CI01000029_05598686_05598998.mRNA mRNA downstream 15020 5598188 ~ 5598998 (-) True CI01000029_05598686_05598998
CI01000029_05562089_05568581.mRNA mRNA downstream 45290 5561800 ~ 5568728 (-) True CI01000029_05562089_05568581
CI01000029_05540251_05550264.mRNA mRNA downstream 62453 5540073 ~ 5551565 (-) True CI01000029_05540251_05550264
CI01000029_05528046_05533580.mRNA mRNA downstream 80438 5527978 ~ 5533580 (-) True CI01000029_05528046_05533580
CI01000029_05429198_05430689.mRNA mRNA downstream 183195 5428709 ~ 5430823 (-) True CI01000029_05429198_05430689
CI01000029_05664917_05665909.mRNA mRNA upstream 271 5664303 ~ 5665909 (-) True CI01000029_05664917_05665909
CI01000029_05675041_05691687.mRNA mRNA upstream 10022 5674054 ~ 5691687 (-) True CI01000029_05675041_05691687
CI01000029_05716319_05720037.mRNA mRNA upstream 52078 5716110 ~ 5720037 (-) True CI01000029_05716319_05720037
CI01000029_05724774_05734931.mRNA mRNA upstream 60742 5724774 ~ 5734931 (-) True CI01000029_05724774_05734931
CI01000029_05742709_05744779.mRNA mRNA upstream 78045 5742077 ~ 5744779 (-) True CI01000029_05742709_05744779
TU175317 other downstream 626593 4986108 ~ 4987425 (-) False G154415
TU175314 other downstream 626593 4986185 ~ 4987425 (-) True G154415
TU175091 other downstream 1136806 4472400 ~ 4477212 (-) True G154201
TU174823 other downstream 1906766 3706223 ~ 3707252 (-) True CI01000029_03698769_03707177
TU174756 other downstream 2327464 3248777 ~ 3286554 (-) True G153891
TU177741 other upstream 1506335 7170367 ~ 7170951 (-) False G156542
TU177684 other upstream 1702295 7366327 ~ 7369547 (-) False G156495
TU177685 other upstream 1702295 7366327 ~ 7369547 (-) False G156495

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00036198 False 2905 mRNA 0.50 20 NC_007131.7 46967269 ~ 47027379 (-)