RNA id: TU175781


Basic Information

Item Value
RNA id TU175781
length 366
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G154815
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 5437716 ~ 5438081 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTTCACTAGTGGCCTTCGACTTTTGGACCTCACTGTATACTAACGTTAACCAAACACAAAGATACGCATTTCTACAGTTAATGTAGTTCTTATTAATAATTCTTAATTTAAAAACATGCGTTTAAAAGCTCAAATGAAGACTGCGCAGTGTTTGACATTGCGGGTAGTACACTTGTGTGTAAGAGGGTTTTAACACAATGTTTTCATTTATCTTTCATAGATATTATTAAAACTTTGCAACGGAGCAGTGGCCATTTTATTCAAACATACGGTTTCGGGTTGTATATGAACGCATTAAATGTTTAAAATGTACGCTGGATACCAGAACCAACTCCTGCAAAACGTTTGCGAAACAAAACAGTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU175755 lncRNA downstream 48109 5388776 ~ 5389607 (-) True G154793
TU175778 lncRNA downstream 52642 5384654 ~ 5385074 (-) True G154812
TU175776 lncRNA downstream 55510 5381336 ~ 5382206 (-) True G154810
TU175775 lncRNA downstream 61619 5375845 ~ 5376097 (-) True G154809
TU175677 lncRNA downstream 79715 5294213 ~ 5358001 (-) True G154735
TU175784 lncRNA upstream 2921 5441002 ~ 5441322 (-) True G154818
TU175760 lncRNA upstream 13908 5451989 ~ 5452551 (-) True G154798
TU175787 lncRNA upstream 33894 5471975 ~ 5472504 (-) True G154821
TU175723 lncRNA upstream 75069 5513150 ~ 5514086 (-) True G154761
TU175823 lncRNA upstream 252686 5690767 ~ 5691221 (-) True G154853
CI01000029_05429198_05430689.mRNA mRNA downstream 6893 5428709 ~ 5430823 (-) True CI01000029_05429198_05430689
CI01000029_05421189_05424167.mRNA mRNA downstream 13277 5420443 ~ 5424439 (-) True CI01000029_05421189_05424167
CI01000029_05410136_05418911.mRNA mRNA downstream 18805 5410136 ~ 5418911 (-) True CI01000029_05410136_05418911
CI01000029_05395318_05400668.mRNA mRNA downstream 37048 5394975 ~ 5400668 (-) True CI01000029_05395318_05400668
CI01000029_05361419_05364642.mRNA mRNA downstream 73015 5361139 ~ 5364701 (-) True CI01000029_05361419_05364642
CI01000029_05528046_05533580.mRNA mRNA upstream 89897 5527978 ~ 5533580 (-) True CI01000029_05528046_05533580
CI01000029_05540251_05550264.mRNA mRNA upstream 101992 5540073 ~ 5551565 (-) True CI01000029_05540251_05550264
CI01000029_05562089_05568581.mRNA mRNA upstream 123719 5561800 ~ 5568728 (-) True CI01000029_05562089_05568581
CI01000029_05598686_05598998.mRNA mRNA upstream 160107 5598188 ~ 5598998 (-) True CI01000029_05598686_05598998
CI01000029_05614085_05663509.mRNA mRNA upstream 175937 5614018 ~ 5664032 (-) True CI01000029_05614085_05663509
TU175317 other downstream 450291 4986108 ~ 4987425 (-) False G154415
TU175314 other downstream 450291 4986185 ~ 4987425 (-) True G154415
TU175091 other downstream 960504 4472400 ~ 4477212 (-) True G154201
TU174823 other downstream 1730464 3706223 ~ 3707252 (-) True CI01000029_03698769_03707177
TU174756 other downstream 2151162 3248777 ~ 3286554 (-) True G153891
TU177741 other upstream 1732286 7170367 ~ 7170951 (-) False G156542
TU177684 other upstream 1928246 7366327 ~ 7369547 (-) False G156495
TU177685 other upstream 1928246 7366327 ~ 7369547 (-) False G156495

Expression Profile