RNA id: TU175823


Basic Information

Item Value
RNA id TU175823
length 424
lncRNA type intronic
GC content 0.35
exon number 2
gene id G154853
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 5690767 ~ 5691221 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGATTAGGGGTGTGATGAGACAGTTAGCTGACGAGACACAAGATTGAGTTCACGAGACGAGATTTTTACACAGTATTTTTAAGAAATCCTCAATGATGAAATGTATGACTAGAAAAATAGTCTGCAGCCAGGTGCATTTGAAATGTTTTAACTAATCATCTTGTAATGAATGTCATTTCAGTTCTACTTTCTAAATATTAATTATCATATGTAGTAAAAGACAACAATACTGAAGCACTGTAAAAGGTTTTGCCACAAACTCAACTGACTGGCTTCTCTCCTGTATGATTTCTCTTCAGACCTTACTGTACATGAATTATGAGCTTCTACAGCCATTGACCTCCTAACTGAACTCCTTTCCACAAACTGGTCATAGAAATAAATTCTTTTAGTCATATTAAGTGCAAACAATAAGTGCAACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU175723 lncRNA downstream 176681 5513150 ~ 5514086 (-) True G154761
TU175787 lncRNA downstream 218263 5471975 ~ 5472504 (-) True G154821
TU175760 lncRNA downstream 238216 5451989 ~ 5452551 (-) True G154798
TU175784 lncRNA downstream 249445 5441002 ~ 5441322 (-) True G154818
TU175781 lncRNA downstream 252686 5437716 ~ 5438081 (-) True G154815
TU175700 lncRNA upstream 37136 5728357 ~ 5761260 (-) False G154742
TU175701 lncRNA upstream 50235 5741456 ~ 5761260 (-) True G154742
TU175831 lncRNA upstream 54793 5746014 ~ 5748127 (-) False G154860
TU175830 lncRNA upstream 55738 5746959 ~ 5748127 (-) True G154860
TU175861 lncRNA upstream 142578 5833799 ~ 5834024 (-) True G154890
CI01000029_05664917_05665909.mRNA mRNA downstream 24858 5664303 ~ 5665909 (-) True CI01000029_05664917_05665909
CI01000029_05614085_05663509.mRNA mRNA downstream 26735 5614018 ~ 5664032 (-) True CI01000029_05614085_05663509
CI01000029_05598686_05598998.mRNA mRNA downstream 91769 5598188 ~ 5598998 (-) True CI01000029_05598686_05598998
CI01000029_05562089_05568581.mRNA mRNA downstream 122039 5561800 ~ 5568728 (-) True CI01000029_05562089_05568581
CI01000029_05540251_05550264.mRNA mRNA downstream 139202 5540073 ~ 5551565 (-) True CI01000029_05540251_05550264
CI01000029_05716319_05720037.mRNA mRNA upstream 24889 5716110 ~ 5720037 (-) True CI01000029_05716319_05720037
CI01000029_05724774_05734931.mRNA mRNA upstream 33553 5724774 ~ 5734931 (-) True CI01000029_05724774_05734931
CI01000029_05742709_05744779.mRNA mRNA upstream 50856 5742077 ~ 5744779 (-) True CI01000029_05742709_05744779
CI01000029_05873343_05884423.mRNA mRNA upstream 181660 5872881 ~ 5884790 (-) True CI01000029_05873343_05884423
CI01000029_05889701_05899499.mRNA mRNA upstream 197880 5889101 ~ 5899772 (-) True CI01000029_05889701_05899499
TU175317 other downstream 703342 4986108 ~ 4987425 (-) False G154415
TU175314 other downstream 703342 4986185 ~ 4987425 (-) True G154415
TU175091 other downstream 1213555 4472400 ~ 4477212 (-) True G154201
TU174823 other downstream 1983515 3706223 ~ 3707252 (-) True CI01000029_03698769_03707177
TU174756 other downstream 2404213 3248777 ~ 3286554 (-) True G153891
TU177741 other upstream 1479146 7170367 ~ 7170951 (-) False G156542
TU177684 other upstream 1675106 7366327 ~ 7369547 (-) False G156495
TU177685 other upstream 1675106 7366327 ~ 7369547 (-) False G156495

Expression Profile