RNA id: TU183838


Basic Information

Item Value
RNA id TU183838
length 202
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G161928
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 7787878 ~ 7788079 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTAGCAACCACTGTTTTTAAGACACAATAAAGGTCTAAAAAAATCACAAGTGGGTTATAACTGGTGTGTTTTATGTCATAGATCAAAACGTGAAAATATTTAGAGGCTTTGTTAACCACAGACCTTATTTAAGGCGATTTAGTAAAATCCCATTCAGAAAACCCATTGACTTCGGGGCGATGGAACCGGAAGTCCTAAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183836 lncRNA upstream 2671 7785004 ~ 7785207 (+) True G161926
TU183834 lncRNA upstream 4324 7783297 ~ 7783554 (+) True G161924
TU183803 lncRNA upstream 55779 7731819 ~ 7732099 (+) True G161895
TU183802 lncRNA upstream 56377 7731116 ~ 7731501 (+) True G161894
TU183662 lncRNA upstream 62861 7722853 ~ 7725017 (+) True CI01000030_07722943_07724722
TU183839 lncRNA downstream 29 7788108 ~ 7788365 (+) True G161929
TU183840 lncRNA downstream 9671 7797750 ~ 7798459 (+) True G161930
TU183841 lncRNA downstream 10562 7798641 ~ 7798905 (+) True G161931
TU183842 lncRNA downstream 11218 7799297 ~ 7799499 (+) True G161932
TU183843 lncRNA downstream 11722 7799801 ~ 7800028 (+) True G161933
CI01000030_07759509_07760589.mRNA mRNA upstream 26996 7758805 ~ 7760882 (+) True CI01000030_07759509_07760589
CI01000030_07738356_07746377.mRNA mRNA upstream 41432 7738356 ~ 7746446 (+) True CI01000030_07738356_07746377
CI01000030_07722943_07724722.mRNA mRNA upstream 62880 7722694 ~ 7724998 (+) False CI01000030_07722943_07724722
CI01000030_07673227_07694020.mRNA mRNA upstream 93858 7673227 ~ 7694020 (+) True CI01000030_07673227_07694020
CI01000030_07601044_07646747.mRNA mRNA upstream 140013 7601044 ~ 7647865 (+) False CI01000030_07601044_07646747
CI01000030_07804997_07807303.mRNA mRNA downstream 16583 7804662 ~ 7807916 (+) True CI01000030_07804997_07807303
CI01000030_07829863_07839971.mRNA mRNA downstream 41784 7829863 ~ 7840874 (+) True CI01000030_07829863_07839971
CI01000030_07842295_07842928.mRNA mRNA downstream 53957 7842036 ~ 7842928 (+) True CI01000030_07842295_07842928
CI01000030_07868597_07886123.mRNA mRNA downstream 80213 7868292 ~ 7886228 (+) False CI01000030_07868597_07886123
CI01000030_07899071_07899829.mRNA mRNA downstream 110992 7899071 ~ 7900320 (+) True CI01000030_07899071_07899829
TU183621 other upstream 585393 7199935 ~ 7200017 (+) True G161721
TU181432 other upstream 3270771 4516778 ~ 4517107 (+) False G159816
TU181300 other upstream 3299352 4431800 ~ 4488526 (+) True G159685
TU180187 other upstream 4744105 3013456 ~ 3013518 (+) True G158703
TU179886 other upstream 5173585 2595876 ~ 2614293 (+) True G158416
TU183810 other downstream 66006 7854085 ~ 7859348 (+) True G161901
TU184054 other downstream 449886 8237965 ~ 8239604 (+) True G162088
TU183922 other downstream 756503 8544582 ~ 8548325 (+) True G161986
TU184111 other downstream 779931 8568010 ~ 8571726 (+) True G162137
TU184486 other downstream 1568324 9356403 ~ 9357014 (+) False G162449

Expression Profile