RNA id: TU184409


Basic Information

Item Value
RNA id TU184409
length 278
lncRNA type intronic
GC content 0.44
exon number 1
gene id G162379
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 10668399 ~ 10668676 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACAAAAATAACGACTTTATTCAATAATATCTTCTCTTCTGTGTAATTCTCATACATTGTTTACGTTCAGCACTTCCAGGTTCTACGCCAGAACGCCGACTCATTATTGGCCGGCTCCTGCGTCAACATCACACATATGTGTTGTGCTGATCACGTGATCAGCTTCAGCCAATACTGAGCCGGCATTCGGACGTAAACACGGAAGCGCTGCACTGTGCTTTACTGCAGCAACTGCGTAAAGATAATGACAGGGAAGAGAAGATACTGTTGAATAAAGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184395 lncRNA upstream 17528 10650424 ~ 10650871 (+) True G162365
TU184814 lncRNA upstream 26366 10641805 ~ 10642033 (+) True G162722
TU184404 lncRNA upstream 44591 10622489 ~ 10623808 (+) True G162374
TU184785 lncRNA upstream 104082 10522304 ~ 10564317 (+) False G162694
TU184786 lncRNA upstream 104082 10522589 ~ 10564317 (+) True G162694
TU184386 lncRNA downstream 145 10668821 ~ 10669837 (+) True G162356
TU184334 lncRNA downstream 36245 10704921 ~ 10712174 (+) True G162306
TU184895 lncRNA downstream 120091 10788767 ~ 10789149 (+) True G162793
TU184896 lncRNA downstream 125134 10793810 ~ 10794162 (+) True G162794
TU184897 lncRNA downstream 125567 10794243 ~ 10794464 (+) True G162795
CI01000030_10646148_10649874.mRNA mRNA upstream 18462 10645873 ~ 10649937 (+) True CI01000030_10646148_10649874
CI01000030_10642268_10643835.mRNA mRNA upstream 24085 10642268 ~ 10644314 (+) True CI01000030_10642268_10643835
CI01000030_10628602_10631875.mRNA mRNA upstream 36287 10628602 ~ 10632112 (+) True CI01000030_10628602_10631875
CI01000030_10605608_10626845.mRNA mRNA upstream 41121 10603370 ~ 10627278 (+) True CI01000030_10605608_10626845
CI01000030_10596446_10602032.mRNA mRNA upstream 64762 10596217 ~ 10603637 (+) True CI01000030_10596446_10602032
CI01000030_10689813_10702377.mRNA mRNA downstream 20772 10689448 ~ 10702993 (+) True CI01000030_10689813_10702377
CI01000030_10716988_10729316.mRNA mRNA downstream 47753 10716429 ~ 10729662 (+) True CI01000030_10716988_10729316
CI01000030_10738658_10751094.mRNA mRNA downstream 69411 10738087 ~ 10751548 (+) False CI01000030_10738658_10751094
CI01000030_10753303_10762765.mRNA mRNA downstream 84627 10753303 ~ 10762765 (+) True CI01000030_10753303_10762765
CI01000030_10766284_10769462.mRNA mRNA downstream 97608 10766284 ~ 10769484 (+) True CI01000030_10766284_10769462
TU184331 other upstream 166756 10491446 ~ 10491607 (+) True G162303
TU184320 other upstream 447175 10221095 ~ 10221224 (+) True G162297
TU184321 other upstream 532840 10133299 ~ 10133763 (+) True G162297
TU184353 other upstream 622516 10042793 ~ 10042887 (+) True G162323
TU184485 other upstream 1311385 9356559 ~ 9357014 (+) False G162449
TU184890 other downstream 69905 10738581 ~ 10740551 (+) True CI01000030_10738658_10751094
TU184924 other downstream 197336 10866012 ~ 10868440 (+) True G162821
TU184823 other downstream 672079 11340755 ~ 11340925 (+) True G162730
TU185083 other downstream 823925 11492601 ~ 11496119 (+) True G162951

Expression Profile