RNA id: CI01000034_00361018_00362033.mRNA


Basic Information

Item Value
RNA id CI01000034_00361018_00362033.mRNA
length 1120
RNA type mRNA
GC content 0.53
exon number 1
gene id CI01000034_00361018_00362033
representative True

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 360914 ~ 362033 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACACTGACGAACAGTATCACAATGTTCTCATGCCTAGCGTTTATGGCGTCATCTGCTTCGTCGGCATTATAGGCAACTGCATTGTCATCTACACCATCGTCAAAAAGACAAAGTTCAGGGCGCAACAGACGGTGCCTGACATCTTCATCTTCAGTCTTTCAATTGCAGACCTTCTGTTTCTCCTAGGCATGCCGTTCCTCATTCACCAGCTGGTGGGAAACGGTTCCTGGTGTTTCGGTGCCACCATGTGCACCGTTATCACAGCGATGGACTCCAACAGCCAGATTGTGAGCACCTACATTTTAACAGTCATGACTTTGGATCGATACTTGGCAACAGTTCATCCCATCCGCTTCAACCACATTCGCACTCCATGCGTGGCCGTGGCGGTCGTCGGCCTGGTGTGGATCCTCTCGCTGCTGTCCATCACGCCGGTGTGGATGTACGCCGGCCTTATGCCCCTGCGAGACGGTTCAGTGGGATGCGCTCTGCTCCTCCCCAATCCGGCTACAGACACCTACTGGTTTACTCTCTACCAGTTCGTGCTGGCGTTCGCTTTGCCTTTGGTGATCATTTGCGTGGTGTTTTTCAAGATCCTCCAGAACATGGCAGCCACGGTCGCCCCACTTCCCCAGCACAGCCTTCGCGTGCGCACCAGAAAGGTCACTCGGATGGCAGTCGCCATATGCCTGGCATTCTTTATTTGTTGGGCACCTCATTACATCTTGCAACTGGCACATCTGAGCGTGCAGCGGCCCAGTTACGCCTTCCTCTACGCCTATAACATCGCCATCAGCATGGGCTACGCCAACAGTTGCATTAACCCGCTTCTCTACATCATGCTCAGTGAGACCTTCAAAAGACAATTCATCGTAGCCATCCGGCCAGTGCACAAAGACTTCCGGGCTGATCCGGGAACGGCCGAAGGGAGCGTCAGTCTACGTTTGGCCCCTGACGGAGCGCAGCAGTCCCAGTCCTCCCGGGAGCTGTTGCCGGTTACCGTGGCTGTACATTGAAACTATTATCTCACCAGGAAACCCTGGGAAACTGCACTGAGTCATGCTGAAGACATTTTTGTGTGTGTCTATAATGAGCATGCAGCTGAAAAGAAGTCTATAAA

Function

GO:

id name namespace
GO:0007218 neuropeptide signaling pathway biological_process

KEGG:

id description
K04320 MCHR1; melanin-concentrating hormone receptor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194632 lncRNA downstream 9759 346849 ~ 351155 (-) True G171324
TU194577 lncRNA downstream 25136 290578 ~ 335778 (-) True G171272
TU194463 lncRNA downstream 173035 169652 ~ 187879 (-) True G171177
TU194495 lncRNA downstream 177549 183024 ~ 183365 (-) True G171206
TU194417 lncRNA downstream 316815 43738 ~ 44099 (-) True G171136
TU194657 lncRNA upstream 35681 397714 ~ 399839 (-) True G171339
TU194660 lncRNA upstream 50160 412193 ~ 412427 (-) True G171340
TU194661 lncRNA upstream 50639 412672 ~ 413037 (-) True G171341
TU194617 lncRNA upstream 79254 441287 ~ 442256 (-) True G171309
TU194676 lncRNA upstream 103379 465412 ~ 468708 (-) True G171356
CI01000034_00101894_00115404.mRNA mRNA downstream 245510 101052 ~ 115404 (-) True CI01000034_00101894_00115404
CI01000034_00097095_00098729.mRNA mRNA downstream 261791 97026 ~ 99123 (-) True CI01000034_00097095_00098729
CI01000034_00071780_00082031.mRNA mRNA downstream 278883 71544 ~ 82031 (-) True CI01000034_00071780_00082031
CI01000034_00051315_00059354.mRNA mRNA downstream 301560 50716 ~ 59354 (-) True CI01000034_00051315_00059354
CI01000034_00368808_00390623.mRNA mRNA upstream 6453 368486 ~ 391307 (-) True CI01000034_00368808_00390623
CI01000034_00558341_00561924.mRNA mRNA upstream 196210 558243 ~ 561995 (-) True CI01000034_00558341_00561924
CI01000034_00571856_00577732.mRNA mRNA upstream 209823 571856 ~ 577732 (-) False CI01000034_00571856_00577732
CI01000034_00599073_00603301.mRNA mRNA upstream 237040 599073 ~ 603301 (-) True CI01000034_00599073_00603301
CI01000034_00604811_00614185.mRNA mRNA upstream 242733 604766 ~ 614674 (-) True CI01000034_00604811_00614185
TU194534 other downstream 93668 229404 ~ 267246 (-) True G171229
TU194626 other upstream 214455 577872 ~ 584283 (-) True G171318
TU194720 other upstream 709580 1072584 ~ 1077222 (-) True G171395
TU194733 other upstream 949496 1318049 ~ 1318254 (-) True G171408
TU195117 other upstream 1502085 1864118 ~ 1866373 (-) True G171755
TU195220 other upstream 2079788 2441821 ~ 2446293 (-) False G171835

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00050030 False 4741 mRNA 0.38 2 NC_007114.7 25503442 ~ 25512817 (+)