RNA id: TCONS_00016062


Basic Information

Item Value
RNA id TCONS_00016062
length 395
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id XLOC_008019
representative False

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 34529884 ~ 34535102 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aataaatattttatatctaGATGTCCATTTCAATTGCGGACCTTTCCTTTTTATACCAGGTGACATGtcctgaataaataaacaatgaaccAGAATGAACAGGGCTCAAATCTCCACAGAGTGACCAAAGAGCTGAACCGGCCAATCAGATGATGTGTCCACCCTTCTGTCAATGACAAGtgttgcCACCTGCATACAAATGTGTTCTTCCTCCTCCCTGCTGTTTCCCTCATTATCAAGCACACCAGCTTCATTTACATCTTTTTTTCCTGCCCTGCACACATCTGTCGTCTCCTACATGCTAGTTCCCTATCCCTCAGGACGTATCCTACCACCCAGGTCAATGGAATAAGAGAGAATAGCCTGGCAACTACAAGGTTAAAAGAACCGTGTCC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00015678 lncRNA downstream 17006 34512236 ~ 34512878 (-) True XLOC_008018
TCONS_00016061 lncRNA downstream 38997 34344082 ~ 34490887 (-) False XLOC_008017
TCONS_00016427 lncRNA downstream 40423 34462686 ~ 34489461 (-) True XLOC_008017
TCONS_00015662 lncRNA downstream 631295 33875058 ~ 33898589 (-) True XLOC_008009
TCONS_00015661 lncRNA downstream 657792 33868571 ~ 33872092 (-) True XLOC_008008
TCONS_00016428 lncRNA upstream 20097 34552695 ~ 34556328 (-) True XLOC_008020
TCONS_00015686 lncRNA upstream 102919 34635517 ~ 34637511 (-) False XLOC_008022
TCONS_00016429 lncRNA upstream 102919 34635517 ~ 34657105 (-) False XLOC_008022
TCONS_00015689 lncRNA upstream 104936 34637534 ~ 34657105 (-) False XLOC_008022
TCONS_00016430 lncRNA upstream 265030 34797628 ~ 34797996 (-) True XLOC_008023
TCONS_00015677 mRNA downstream 16781 34512011 ~ 34513103 (-) False XLOC_008018
TCONS_00015676 mRNA downstream 17025 34510700 ~ 34512859 (-) False XLOC_008018
TCONS_00015675 mRNA downstream 253310 34125855 ~ 34276574 (-) True XLOC_008016
TCONS_00015674 mRNA downstream 455374 34059447 ~ 34074510 (-) True XLOC_008015
TCONS_00015673 mRNA downstream 470203 34045284 ~ 34059681 (-) False XLOC_008015
TCONS_00015680 mRNA upstream 29828 34562426 ~ 34633960 (-) False XLOC_008021
TCONS_00015681 mRNA upstream 30255 34562853 ~ 34633960 (-) False XLOC_008021
TCONS_00015682 mRNA upstream 30464 34563062 ~ 34605607 (-) False XLOC_008021
TCONS_00015683 mRNA upstream 49390 34581988 ~ 34605804 (-) True XLOC_008021
TCONS_00015684 mRNA upstream 101547 34634145 ~ 34771864 (-) False XLOC_008022
TCONS_00015641 other downstream 1051897 33473804 ~ 33477987 (-) False XLOC_008000
TCONS_00015649 other downstream 1052152 33475820 ~ 33477732 (-) False XLOC_008000
TCONS_00015628 other downstream 1184911 33340138 ~ 33344973 (-) True XLOC_007991
TCONS_00015626 other downstream 1196303 33333448 ~ 33333581 (-) True XLOC_007990
TCONS_00015612 other downstream 1298120 33220856 ~ 33231764 (-) True XLOC_007986
TCONS_00015693 other upstream 860149 35392747 ~ 35405723 (-) True XLOC_008028
TCONS_00015701 other upstream 1038947 35571545 ~ 35853647 (-) True XLOC_008033
TCONS_00015719 other upstream 1897645 36430243 ~ 36437239 (-) True XLOC_008042
TCONS_00015732 other upstream 4231068 38763666 ~ 38774885 (-) False XLOC_008051
TCONS_00015734 other upstream 4238032 38770630 ~ 38782985 (-) True XLOC_008051

Expression Profile

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