RNA id: TU224154


Basic Information

Item Value
RNA id TU224154
length 277
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G197451
representative True

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 5224443 ~ 5224719 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCCACAGTTCGTCGCACATGTGATTCACAGATTAATTTCACGTTTAACCACCATAGAGTGAATGGTTATCATTTGCACGTTTTGTCTTGCTAGTTTACACATTCAATAGATTTTAAACTATTCCAGCGCTGGAAGAGGCAGAGGAGAATTTAATGCGGTTCTCGAGCAGCTGTTATCTGTGCGCAGTGCGCACAGCCACACACACCCGAAGCGCGTGTGCACAGAGAGAGGCGCATTTCAGATACTTCAGAAATTATGTTTAAATACCCATCTCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224153 lncRNA upstream 4459 5219755 ~ 5219984 (+) True G197450
TU224151 lncRNA upstream 7357 5216830 ~ 5217086 (+) True G197448
TU224150 lncRNA upstream 9595 5214594 ~ 5214848 (+) True G197447
TU224149 lncRNA upstream 11813 5212425 ~ 5212630 (+) True G197446
TU224148 lncRNA upstream 14965 5209057 ~ 5209478 (+) True G197445
TU224155 lncRNA downstream 3027 5227746 ~ 5227973 (+) True G197452
TU224156 lncRNA downstream 8764 5233483 ~ 5233701 (+) True G197453
TU224157 lncRNA downstream 16834 5241553 ~ 5241852 (+) True G197454
TU224158 lncRNA downstream 22326 5247045 ~ 5247253 (+) True G197455
TU224159 lncRNA downstream 22580 5247299 ~ 5247764 (+) True G197456
CI01000046_04861221_04879259.mRNA mRNA upstream 343774 4861221 ~ 4880669 (+) True CI01000046_04861221_04879259
CI01000046_04841558_04852685.mRNA mRNA upstream 371267 4841558 ~ 4853176 (+) True CI01000046_04841558_04852685
CI01000046_04811748_04819011.mRNA mRNA upstream 405075 4811610 ~ 4819368 (+) True CI01000046_04811748_04819011
CI01000046_04806234_04808207.mRNA mRNA upstream 416108 4805355 ~ 4808335 (+) True CI01000046_04806234_04808207
CI01000046_04694468_04701075.mRNA mRNA upstream 523190 4693655 ~ 4701253 (+) True CI01000046_04694468_04701075
CI01000046_05279865_05281709.mRNA mRNA downstream 55146 5279865 ~ 5282127 (+) True CI01000046_05279865_05281709
CI01000046_05305482_05310465.mRNA mRNA downstream 80474 5305193 ~ 5310479 (+) True CI01000046_05305482_05310465
CI01000046_05315583_05316990.mRNA mRNA downstream 90466 5315185 ~ 5317089 (+) True CI01000046_05315583_05316990
CI01000046_05335886_05341205.mRNA mRNA downstream 111167 5335886 ~ 5341888 (+) True CI01000046_05335886_05341205
CI01000046_05392316_05401559.mRNA mRNA downstream 167264 5391983 ~ 5402075 (+) True CI01000046_05392316_05401559
TU223530 other upstream 802756 4415530 ~ 4421687 (+) True G196869
TU223789 other upstream 853013 4371011 ~ 4371430 (+) True G197121
TU223720 other upstream 1074663 4149423 ~ 4149780 (+) True G197055
TU223494 other upstream 1278943 3943828 ~ 3945500 (+) True CI01000046_03943890_03945302
TU223597 other upstream 2030172 3186995 ~ 3194271 (+) True G196936
TU224052 other downstream 49663 5274382 ~ 5276453 (+) True G197352
TU224234 other downstream 501402 5726121 ~ 5742684 (+) True G197528
TU224505 other downstream 1595219 6819938 ~ 6820389 (+) True G197788

Expression Profile