RNA id: TU236124


Basic Information

Item Value
RNA id TU236124
length 355
lncRNA type intronic
GC content 0.50
exon number 1
gene id G208096
representative True

Chromosome Information

Item Value
chromosome id CI01000049
NCBI id null
chromosome length 9665442
location 3933272 ~ 3933626 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGGAGCTTACGCTGGGCGCTGGAAGGGGTCAGTAACTGTGGTGTTTTATTTTTGATCCCATTTTGTCGGTCACTACTGACGTACGTCGAACATGACCAACTGAACGGGAACGTCTCGGTTACATATGTAACCCTCGTTCCCTGAAGGAGGGAACGGAGACGTACGTCCCGTCGCCACAGTTCCTGTGCCTTCGCTGTAGTGCAGACTCAAGGTTGTCTCCTCAGCGAAAAACAGAGTGCGATTGCATCCGCTTCCCTATTTATACCCACCTGCATTATGCAAATATTGCACGCCAATTCCATTGGCTTGTTTAGTTTCACTCGAAGCTGATAGGGCTCTCTGGCATTATCCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU236123 lncRNA upstream 683 3932364 ~ 3932589 (+) True G208095
TU236118 lncRNA upstream 10393 3922426 ~ 3922879 (+) True G208090
TU236098 lncRNA upstream 31799 3899709 ~ 3901473 (+) True G208071
TU236017 lncRNA upstream 66729 3823907 ~ 3866543 (+) False G207995
TU236126 lncRNA downstream 6434 3940060 ~ 3940304 (+) True G208098
TU236140 lncRNA downstream 214955 4148581 ~ 4151769 (+) True G208110
TU236160 lncRNA downstream 233458 4167084 ~ 4167339 (+) True G208130
TU236174 lncRNA downstream 273743 4207369 ~ 4207846 (+) True G208144
TU236209 lncRNA downstream 384766 4318392 ~ 4318643 (+) True G208173
CI01000049_03893675_03894085.mRNA mRNA upstream 38103 3892179 ~ 3895169 (+) True CI01000049_03893675_03894085
CI01000049_03872066_03885573.mRNA mRNA upstream 47032 3872066 ~ 3886240 (+) True CI01000049_03872066_03885573
CI01000049_03852103_03860363.mRNA mRNA upstream 72498 3852103 ~ 3860774 (+) True CI01000049_03852103_03860363
CI01000049_03844455_03850424.mRNA mRNA upstream 82842 3844455 ~ 3850430 (+) True CI01000049_03844455_03850424
CI01000049_03843068_03843461.mRNA mRNA upstream 89727 3842852 ~ 3843545 (+) True CI01000049_03843068_03843461
CI01000049_03951470_03952048.mRNA mRNA downstream 17696 3951322 ~ 3952173 (+) True CI01000049_03951470_03952048
CI01000049_03961350_03962120.mRNA mRNA downstream 27653 3961279 ~ 3962949 (+) True CI01000049_03961350_03962120
CI01000049_03972425_03973129.mRNA mRNA downstream 38620 3972246 ~ 3973847 (+) True CI01000049_03972425_03973129
CI01000049_04000506_04009508.mRNA mRNA downstream 66475 4000101 ~ 4009726 (+) True CI01000049_04000506_04009508
CI01000049_04064603_04090446.mRNA mRNA downstream 130977 4064603 ~ 4090446 (+) True CI01000049_04064603_04090446
TU236101 other upstream 51061 3877396 ~ 3882211 (+) True G208074
TU235889 other upstream 308961 3624002 ~ 3624311 (+) True G207888
TU234101 other upstream 2089444 1839815 ~ 1843828 (+) True CI01000049_01840330_01843844
TU236272 other downstream 539899 4473525 ~ 4473602 (+) True G208235
TU237839 other downstream 2944507 6878133 ~ 6882030 (+) True G209660
TU238078 other downstream 3285222 7297053 ~ 7297062 (+) True G209859
TU238335 other downstream 3940124 7873750 ~ 7878856 (+) True G210091
TU238356 other downstream 4394326 8328406 ~ 8329152 (+) True G210112

Expression Profile