RNA id: TU261990


Basic Information

Item Value
RNA id TU261990
length 271
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G230838
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 2849814 ~ 2850084 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCTTATCTAGCGAAACGATCGGCCATTTTCTAAAAAAAAATAAAAATGATATACTTTTTAACCACAAATGCTTGTCTTGCACTAGCTTTGTGATGCGCCACACATTACGTAATTATGTTGGAAAGGTCACACGTGATGTATTGGTGGAAGTACCAAGCAAGTGTTTACAAAGTGAACGTGCAAAGTCTAAGTCAAACGGCCTTTACAAAAAAAGTAAAACAACGATGTTGGACTATTTTGAAGTTGGAGGAGAAAAGGAGTTGAAGTTTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU261848 lncRNA upstream 6666 2838097 ~ 2843148 (+) True G230702
TU261983 lncRNA upstream 12175 2837157 ~ 2837639 (+) True G230831
TU261988 lncRNA upstream 43196 2804028 ~ 2806618 (+) True G230836
TU261980 lncRNA upstream 66057 2782936 ~ 2783757 (+) True G230828
TU261969 lncRNA upstream 152054 2697490 ~ 2697760 (+) True G230817
TU261991 lncRNA downstream 371 2850455 ~ 2851982 (+) True G230839
TU261839 lncRNA downstream 14513 2864597 ~ 2866640 (+) True G230693
TU261841 lncRNA downstream 60872 2910956 ~ 2913576 (+) True G230695
TU261851 lncRNA downstream 83824 2933908 ~ 2964009 (+) True G230705
TU261843 lncRNA downstream 138925 2989009 ~ 3000019 (+) True G230697
CI01000054_02824071_02824355.mRNA mRNA upstream 25172 2824025 ~ 2824642 (+) True CI01000054_02824071_02824355
CI01000054_02652696_02685815.mRNA mRNA upstream 163981 2652696 ~ 2685833 (+) True CI01000054_02652696_02685815
CI01000054_02613166_02614884.mRNA mRNA upstream 234356 2613058 ~ 2615458 (+) True CI01000054_02613166_02614884
CI01000054_02589793_02592201.mRNA mRNA upstream 256888 2589793 ~ 2592926 (+) True CI01000054_02589793_02592201
CI01000054_02564258_02570248.mRNA mRNA upstream 279409 2563692 ~ 2570405 (+) True CI01000054_02564258_02570248
CI01000054_02951289_02967370.mRNA mRNA downstream 100831 2950915 ~ 2967660 (+) True CI01000054_02951289_02967370
CI01000054_02975008_02985278.mRNA mRNA downstream 124504 2974588 ~ 2985335 (+) True CI01000054_02975008_02985278
CI01000054_03016199_03016501.mRNA mRNA downstream 165875 3015959 ~ 3016693 (+) True CI01000054_03016199_03016501
CI01000054_03424472_03425704.mRNA mRNA downstream 572970 3423054 ~ 3426433 (+) True CI01000054_03424472_03425704
CI01000054_03558982_03663042.mRNA mRNA downstream 708898 3558982 ~ 3663042 (+) True CI01000054_03558982_03663042
TU261855 other upstream 545432 2289831 ~ 2304382 (+) True CI01000054_02289802_02330591
TU261003 other upstream 1123021 1725669 ~ 1726793 (+) True CI01000054_01725792_01726688
TU260765 other upstream 1188249 1650960 ~ 1661565 (+) True CI01000054_01650242_01665628
TU260728 other upstream 1267745 1578435 ~ 1582069 (+) True G229750
TU260932 other upstream 1442684 1397080 ~ 1407130 (+) False G229936
TU261835 other downstream 228418 3078502 ~ 3087392 (+) True G230689
TU262576 other downstream 1058367 3908451 ~ 3913546 (+) True CI01000054_03848427_03914231
TU263121 other downstream 1557068 4407152 ~ 4450730 (+) True G231863
TU263797 other downstream 2772931 5623015 ~ 5623101 (+) True G232485
TU263881 other downstream 3143576 5993660 ~ 6041863 (+) True G232558

Expression Profile