RNA id: TU277307


Basic Information

Item Value
RNA id TU277307
length 375
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G244304
representative True

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 405583 ~ 405973 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACCAATATATAAATATTTTCTCTATACTCAAATCATCAACAATATCAATGAGCACCATATGCCAGATGTTTTTTGGAGGGAAACTTGCTGTTTTCTTCAGCCTCTTGACTCACATTTCTCAACAGTGACTCATCCTGACAGATGACACTGATAGTTTAGAGAATGACTGGCCTTCATTCCACCACAGACCCTCTCATCATTCAGAGGAATAAAGGCTCTGGTGCCATAATAAGACTCCTCTCTCTCTCTCTGTGAGTGTCACACACAAACAGTCGTTGTGTCCAGCTGCAGGGCCGATGCAGGTCTCTCCAGTGTGGAATGTGTGAGAGCTGTGGTCTGTGTCTGCTTCCCACACTTCAGTCCCATTCAGCGAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU277261 lncRNA downstream 61904 343461 ~ 343695 (-) True CI01000057_00339874_00343207
TU277248 lncRNA downstream 96542 308786 ~ 309057 (-) True G244264
TU277154 lncRNA downstream 231841 171156 ~ 173758 (-) True G244180
TU277152 lncRNA downstream 238412 165598 ~ 167187 (-) True G244178
TU277130 lncRNA downstream 259139 145357 ~ 146460 (-) True G244157
TU277313 lncRNA upstream 1247 407220 ~ 407829 (-) True G244305
TU277275 lncRNA upstream 7939 413912 ~ 415609 (-) True G244287
TU277341 lncRNA upstream 69713 475686 ~ 475931 (-) True CI01000057_00475661_00476027
TU277348 lncRNA upstream 73970 479943 ~ 480154 (-) True G244338
TU277349 lncRNA upstream 74224 480197 ~ 480417 (-) True G244339
CI01000057_00400397_00400972.mRNA mRNA downstream 4585 400057 ~ 401014 (-) True CI01000057_00400397_00400972
CI01000057_00381820_00385585.mRNA mRNA downstream 20014 381333 ~ 385585 (-) True CI01000057_00381820_00385585
CI01000057_00339874_00343207.mRNA mRNA downstream 62086 339811 ~ 343513 (-) False CI01000057_00339874_00343207
CI01000057_00314025_00331813.mRNA mRNA downstream 73786 313546 ~ 331813 (-) True CI01000057_00314025_00331813
CI01000057_00257594_00301277.mRNA mRNA downstream 104091 257571 ~ 301508 (-) True CI01000057_00257594_00301277
CI01000057_00409300_00412579.mRNA mRNA upstream 3195 409168 ~ 412625 (-) True CI01000057_00409300_00412579
CI01000057_00420698_00421063.mRNA mRNA upstream 14013 419986 ~ 421063 (-) True CI01000057_00420698_00421063
CI01000057_00459703_00467870.mRNA mRNA upstream 52970 458943 ~ 467870 (-) True CI01000057_00459703_00467870
CI01000057_00475661_00476027.mRNA mRNA upstream 69419 475392 ~ 476027 (-) False CI01000057_00475661_00476027
CI01000057_00534471_00559759.mRNA mRNA upstream 127615 533588 ~ 559759 (-) True CI01000057_00534471_00559759
TU277369 other upstream 164557 570530 ~ 570914 (-) False G244358
TU277370 other upstream 164557 570530 ~ 571028 (-) True G244358
TU277905 other upstream 1395611 1805098 ~ 1805153 (-) True G244797
TU277965 other upstream 1514083 1920056 ~ 1921421 (-) True CI01000057_01904867_01921400
TU279491 other upstream 3485762 3895949 ~ 3897691 (-) True G246256

Expression Profile