RNA id: TU323996


Basic Information

Item Value
RNA id TU323996
length 706
lncRNA type sense_over
GC content 0.41
exon number 1
gene id CI01000072_01901888_01919435
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 1900924 ~ 1919473 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTGGTTTTTAGGGTAAGGCATATAGTTGCCTGAGATGCAAAGGTATAAATATATAAATATATAAACTAATAAACAAACAATTATAAACAAAAATTCAGATATGAAACTGCAATTTGGCATGATGTTTGGTACCCTAATTCAAATTCAGGAATTCAATTAGAATTTAAAAGGCATTCTCATTCAGTTCTGACTGGCACACAAGCCTAATTTCCACATCTTAAATGCATCAATTTAACCCAAGCGCTTCTTTAGAGCTCAGCAGAGGAAGAGACAGACCGACAGCGTGGGGAAGAAAAATAAAAACGTAGAGTAGGTTGGAATAACATACTTCACAGTCTCACGGTCATTGTTTTACATCCTAAGAGGTATGCTTTATCACCCTTCCGTCTATATGTGTGCTGCATTAATGATGCATGCCCTCTTCTTTACTTTGGAGCTGTTATTTTGATATAGATGGTTGCCTTGACGTCACAGTTATAAGCGAGTCCAAGTCATTGTGTGGGAAAGTGCAGGATGTGTGCACTGGCTATAAGTTGCACCTCCCTGTTGTGCCAGGATGACGGTAAAGAGGTCTTTTGTTTCAATTAGCGCTCTGTGGTCTACTTTCTCCATTATGATGAAAGGTCACGACCTCTGCTGGAGTTCACACAGGGACAAGCCGATCAGACCTCGTCTTGGCCAGCAGACTTGGAGCGGGTGGGGAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU323994 lncRNA downstream 484 1914119 ~ 1914497 (-) True G285867
TU323990 lncRNA downstream 5618 1909128 ~ 1909363 (-) True G285863
TU323983 lncRNA downstream 21315 1893345 ~ 1893666 (-) True G285856
TU323982 lncRNA downstream 22234 1892505 ~ 1892747 (-) True G285855
TU323975 lncRNA downstream 34160 1880599 ~ 1880821 (-) True G285848
TU323997 lncRNA upstream 12968 1928654 ~ 1928883 (-) True G285870
TU323891 lncRNA upstream 18382 1934068 ~ 1935773 (-) True G285765
TU323864 lncRNA upstream 21920 1937606 ~ 1939318 (-) True G285743
TU323998 lncRNA upstream 43052 1958738 ~ 1959059 (-) True G285871
TU323999 lncRNA upstream 44834 1960520 ~ 1960809 (-) True G285872
CI01000072_01854562_01862622.mRNA mRNA downstream 52293 1854334 ~ 1862688 (-) True CI01000072_01854562_01862622
CI01000072_01826415_01834432.mRNA mRNA downstream 80534 1826325 ~ 1834447 (-) True CI01000072_01826415_01834432
CI01000072_01816759_01818078.mRNA mRNA downstream 96636 1816724 ~ 1818345 (-) True CI01000072_01816759_01818078
CI01000072_01792476_01805286.mRNA mRNA downstream 109269 1792073 ~ 1805712 (-) True CI01000072_01792476_01805286
CI01000072_01596829_01610605.mRNA mRNA downstream 304121 1596783 ~ 1610860 (-) False CI01000072_01596829_01610605
CI01000072_01946903_01949124.mRNA mRNA upstream 29602 1945288 ~ 1949124 (-) True CI01000072_01946903_01949124
CI01000072_01973002_01985111.mRNA mRNA upstream 57210 1972896 ~ 1985244 (-) True CI01000072_01973002_01985111
CI01000072_01987945_01988280.mRNA mRNA upstream 71588 1987274 ~ 1988773 (-) True CI01000072_01987945_01988280
CI01000072_02041267_02050950.mRNA mRNA upstream 125052 2040738 ~ 2053184 (-) True CI01000072_02041267_02050950
CI01000072_02074797_02106818.mRNA mRNA upstream 158301 2073987 ~ 2106873 (-) True CI01000072_02074797_02106818
TU323812 other downstream 287086 1602289 ~ 1602443 (-) True G285697
TU323815 other downstream 287086 1594111 ~ 1627895 (-) True CI01000072_01596829_01610605
TU323625 other downstream 560049 1335507 ~ 1354932 (-) True G285534
TU322054 other downstream 1630702 283623 ~ 283764 (-) True G284127
TU323892 other upstream 89865 2005551 ~ 2008309 (-) True G285766
TU323875 other upstream 252362 2168048 ~ 2170658 (-) True G285752
TU324139 other upstream 1078083 2993769 ~ 2999495 (-) True G286005
TU324361 other upstream 2054584 3970270 ~ 3976002 (-) False G286205
TU324366 other upstream 2054584 3970270 ~ 3976067 (-) False G286205

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00019167 False 1259 lncRNA 0.45 4 NC_007126.7 25738920 ~ 25760663 (-)