RNA id: TU373847


Basic Information

Item Value
RNA id TU373847
length 241
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G328905
representative True

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 2007989 ~ 2008229 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGTATCTAATATGATATACAGCTGCGTTACCTCATACTCATGACCGGAAAAGCGGAAGCAGCGCCGGCGACTGCGGCATAATAAAAGTTCCGCTGCTCGTGAGGCGTGTGTTGCGCAATCGCTCCAGCGGCCTCGTTCAGCTCCCACAACACTCGGTCCTGCTCTGCTTCATACTACAGTAACATTAATAATTGCATCCATGAACATGATTTCTTCCTGAGTCCTATCCCGATTGTTTCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU373834 lncRNA upstream 23276 1983922 ~ 1984713 (+) True G328894
TU373833 lncRNA upstream 24463 1983321 ~ 1983526 (+) True G328893
TU373782 lncRNA upstream 24671 1981257 ~ 1983318 (+) True G328852
TU373832 lncRNA upstream 31791 1975720 ~ 1976198 (+) True G328892
TU373770 lncRNA upstream 33215 1973740 ~ 1974774 (+) True G328840
TU373761 lncRNA downstream 24564 2032793 ~ 2033147 (+) True G328831
TU373758 lncRNA downstream 25169 2033398 ~ 2035305 (+) True G328828
TU373860 lncRNA downstream 44369 2052598 ~ 2053042 (+) True G328918
TU373915 lncRNA downstream 135300 2143529 ~ 2144027 (+) True G328965
TU373923 lncRNA downstream 142141 2150370 ~ 2150711 (+) True G328973
CI01000112_01883455_01914770.mRNA mRNA upstream 93214 1883244 ~ 1914775 (+) True CI01000112_01883455_01914770
CI01000112_01865388_01878028.mRNA mRNA upstream 129801 1865101 ~ 1878188 (+) True CI01000112_01865388_01878028
CI01000112_01831462_01857713.mRNA mRNA upstream 149286 1831462 ~ 1858703 (+) True CI01000112_01831462_01857713
CI01000112_01753138_01753764.mRNA mRNA upstream 253582 1752956 ~ 1754407 (+) True CI01000112_01753138_01753764
CI01000112_01711753_01717045.mRNA mRNA upstream 290875 1711232 ~ 1717114 (+) True CI01000112_01711753_01717045
CI01000112_02017278_02032299.mRNA mRNA downstream 9049 2017278 ~ 2032413 (+) True CI01000112_02017278_02032299
CI01000112_02060950_02068272.mRNA mRNA downstream 52492 2060721 ~ 2068604 (+) True CI01000112_02060950_02068272
CI01000112_02109843_02114079.mRNA mRNA downstream 101614 2109843 ~ 2114563 (+) True CI01000112_02109843_02114079
CI01000112_02207728_02210655.mRNA mRNA downstream 199461 2207690 ~ 2210957 (+) True CI01000112_02207728_02210655
CI01000112_02240184_02240792.mRNA mRNA downstream 229440 2237669 ~ 2241243 (+) True CI01000112_02240184_02240792
TU373329 other upstream 774871 1232022 ~ 1233118 (+) True G328456
TU374096 other downstream 609475 2617704 ~ 2618151 (+) False G329125
TU374097 other downstream 609475 2617704 ~ 2618151 (+) False G329125
TU374098 other downstream 609475 2617704 ~ 2618151 (+) True G329125
TU374184 other downstream 912025 2920254 ~ 2931889 (+) True G329194
TU375960 other downstream 3076491 5084720 ~ 5096971 (+) True G330755

Expression Profile