RNA id: TU373834


Basic Information

Item Value
RNA id TU373834
length 792
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G328894
representative True

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 1983922 ~ 1984713 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGCAAGATTAATCGCTATCTTGATTCAAACACCTTCACAATCTTATTTATGAATGATAACGGTTGTACATTGTTACGCCACTAGGTGGTGACAAGTGACAAAAAGAAATTGTATTCGTCTTGAATCATTTATTCAAAAGTTTCATTCAAAACCCTGATTTCAATGAAACAAATATTTATTAATAAGTCATTGAATTGATTCAAAACCATTTAAAAAAAATAATTTATTCAAACTAATTAAATTTTTTTCCAGCAATTAATATTTAGAACTTTTAGTAAATTAATAAAGGCCTTCTGAAGCGAAGCAATGCGTTTGTGTAAGAAAAATATTCATATTAAAAACTAAAATAACTAGCTTCCTGCAGACGGTCATACGCTTGTGAACTTGTGGCAAAAGAGTAACCCCTGACGTGATGTAGGAGTATCATAAGCTTTGACACCTCTCGCTGTTCAAACAAATAGGGCTGGGCAACAAACTCAAGCTCCTCTTCTGTTATATCAAAATCCTCCGACATTATCTTTCAAAATTCTCGTTTCAGACTTTCAATTTGAGACCGGTGTTTTGTTTTGCTCTATTCTCTGTGCTTCCGCATTCATCAATACGTCAAGCTTCGGGTCAGAGTTCACTCTTTGGCCGTAAATCGATGTGTATGGCCGTCTGTCAGAAGCTAGTTACTTTAGTTTTTAAAGTTTTAAATATGGATATTTTTCTTACAAAAACGCATCACTTCACTTCAGAAGGCCTTTATTAACCCCCTGCAGCCGTGTGGATATCTTTTATGATGGATTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU373833 lncRNA upstream 396 1983321 ~ 1983526 (+) True G328893
TU373782 lncRNA upstream 604 1981257 ~ 1983318 (+) True G328852
TU373832 lncRNA upstream 7724 1975720 ~ 1976198 (+) True G328892
TU373770 lncRNA upstream 9148 1973740 ~ 1974774 (+) True G328840
TU373777 lncRNA upstream 51752 1930645 ~ 1932170 (+) True G328847
TU373847 lncRNA downstream 23276 2007989 ~ 2008229 (+) True G328905
TU373761 lncRNA downstream 48080 2032793 ~ 2033147 (+) True G328831
TU373758 lncRNA downstream 48685 2033398 ~ 2035305 (+) True G328828
TU373860 lncRNA downstream 67885 2052598 ~ 2053042 (+) True G328918
TU373915 lncRNA downstream 158816 2143529 ~ 2144027 (+) True G328965
CI01000112_01883455_01914770.mRNA mRNA upstream 69147 1883244 ~ 1914775 (+) True CI01000112_01883455_01914770
CI01000112_01865388_01878028.mRNA mRNA upstream 105734 1865101 ~ 1878188 (+) True CI01000112_01865388_01878028
CI01000112_01831462_01857713.mRNA mRNA upstream 125219 1831462 ~ 1858703 (+) True CI01000112_01831462_01857713
CI01000112_01753138_01753764.mRNA mRNA upstream 229515 1752956 ~ 1754407 (+) True CI01000112_01753138_01753764
CI01000112_01711753_01717045.mRNA mRNA upstream 266808 1711232 ~ 1717114 (+) True CI01000112_01711753_01717045
CI01000112_02017278_02032299.mRNA mRNA downstream 32565 2017278 ~ 2032413 (+) True CI01000112_02017278_02032299
CI01000112_02060950_02068272.mRNA mRNA downstream 76008 2060721 ~ 2068604 (+) True CI01000112_02060950_02068272
CI01000112_02109843_02114079.mRNA mRNA downstream 125130 2109843 ~ 2114563 (+) True CI01000112_02109843_02114079
CI01000112_02207728_02210655.mRNA mRNA downstream 222977 2207690 ~ 2210957 (+) True CI01000112_02207728_02210655
CI01000112_02240184_02240792.mRNA mRNA downstream 252956 2237669 ~ 2241243 (+) True CI01000112_02240184_02240792
TU373329 other upstream 750804 1232022 ~ 1233118 (+) True G328456
TU374096 other downstream 632991 2617704 ~ 2618151 (+) False G329125
TU374097 other downstream 632991 2617704 ~ 2618151 (+) False G329125
TU374098 other downstream 632991 2617704 ~ 2618151 (+) True G329125
TU374184 other downstream 935541 2920254 ~ 2931889 (+) True G329194
TU375960 other downstream 3100007 5084720 ~ 5096971 (+) True G330755

Expression Profile