RNA id: CI01000112_02109843_02114079.mRNA


Basic Information

Item Value
RNA id CI01000112_02109843_02114079.mRNA
length 1743
RNA type mRNA
GC content 0.53
exon number 4
gene id CI01000112_02109843_02114079
representative True

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 2109843 ~ 2114563 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATCTCCATTTGGCTGCTGAGCTGGGCAAGACTTTGCTGGACAGGAACCATGAGCTGGAGCAGGGCCTTCAGCAGATGTACTCCACCAATCATGAACAGCTGCAGGAGATTGAGTACCTGACCAAGCAGGTGGATCTCCTGAGGCAGATGAATGACCAGCACGCTAAAGTTTATGAGCAGCTGGACTTAGCGGCACGAGACCTGGAGAAAAGCAACCAAAGGCTGGTGCTGGATAACCGCACTGCCCAGCACAGGATCCAGAGTCTAACTGAGACCATAGATGGGTTGCAAACTCACATGGAGGGCCTTCAGAAGCAGGTGGACGAACTGAAGATGTCTCAGTCCAAGCGAGATCTCGCAGCTGTGCGCCGCAGCCTTGGTGCCCAAAGCATGTCTTGTCTGAAAGAAATCTATGATCTGCAACAAGACAAGTGCTTGAGCTCAGAGAGCCTGCATGAAGAGAAGTCATGGCCTGCGCTGGATGACCGACGCATGGAGGAGGAGGAGACCTCCACCCTGCAGCACACCCTCCACAACCTCAAGCTACAGCTGGCGTCCGAGCGAGCCCGACGGGTAGAGGCCGAGCGTGAGACGGAGCTGACGGTGCAAGAAAACAGCGCACTGGAAGAGCGGCTGAGTCTGCTGGAGGGAGCGCGCCGTCGGCAGGCTGAGTTGGAGGCCGAGGTGGAGGAGCTGCGGCAGCTGTGGCGCTCTGAGTCGTCCAGTGCAAGACTGGCAGATGCGCTGCTGCCCGACAATGTCTTCTTTGGTGTGGAGGAAAGGGTGAGGGCGGGGCAAGAGGAGGAAGATGGGCTGGAGGCGGAGTTTCCTCAGGGAAGGCGGCGCTGCAGCAGCGAGAGCTACGTCCGAGGCGCTCGAGCCGAGGATATCCGGCGCGGACACGAGCGCACATGCATCCGCCGAGCCCAAGCGGTGAAGCAGCGCGGCATCTCGCTGCTCAACGAGGTGGACGCGCAGTACAGCGCACTACAGGTCAAGTACGAAGAGCTGCTCCGCCGCTGCCAGCAGGGGGCAGACAGCCTCAGCCACAAGGCTGTGCAGACGCCCACAGTCCAAGCGCAACGCCGCAGGAGTCAGGCTGCCACAACAACAGAGACCGTCTGCCTCACAGACGAGCTCCATCAACCAGAATACAAGGCCCTCTTTAAAGAGATCTTCACCTGCATTCAGAAAACCAAAGAGGACCTGAGTGAGAACAGGCCCGGGCAGAGCTGGCAGTATTATACATCTTCAGTGTAGTCATCTGGGGCTTTGCACTTCCATATGTGATTTGAAGGACGTGTCAACAGATTTAATAGTCTTTGTTTGTATGTGTTGATTGCACTATAACACCTGTGCCTATACACAAAATACAACACCAAACCGTCCACATCCACAACCTGCAACTGCAGAATACAGGCCTAAAGGGTGTTTTTGTACTTTTATAAGTCTTATTCCAGTGTATAAGTCTTATTCCAGTGATTTGACACATGTGGACCTCTGCGATACAGCCATACCTGACGCCTGAGTGCATCTGTGCTTTGGGTTTGCCAGCACCTCTTGAATTCGTAGAACCACGTCTTTGTAGACTTAAAAACTTCAACGTCCAATGTTTAGAAGCTAGACTAAATTGTTATTACTAACCACTAACACAGATAATGAGCTAACTTAATGTAAATGCCATGCCTGATAGGGTGAGTCTCACAAAAAGAGAGGGAGAAGTTTCACTCCAGAATCTAAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU373860 lncRNA upstream 56801 2052598 ~ 2053042 (+) True G328918
TU373758 lncRNA upstream 74538 2033398 ~ 2035305 (+) True G328828
TU373761 lncRNA upstream 76696 2032793 ~ 2033147 (+) True G328831
TU373847 lncRNA upstream 101614 2007989 ~ 2008229 (+) True G328905
TU373834 lncRNA upstream 125130 1983922 ~ 1984713 (+) True G328894
TU373915 lncRNA downstream 28966 2143529 ~ 2144027 (+) True G328965
TU373923 lncRNA downstream 35807 2150370 ~ 2150711 (+) True G328973
TU373938 lncRNA downstream 58705 2173268 ~ 2173528 (+) True G328984
TU373940 lncRNA downstream 66100 2180663 ~ 2180917 (+) True G328986
TU373941 lncRNA downstream 66465 2181028 ~ 2181371 (+) True G328987
CI01000112_02060950_02068272.mRNA mRNA upstream 41239 2060721 ~ 2068604 (+) True CI01000112_02060950_02068272
CI01000112_02017278_02032299.mRNA mRNA upstream 77430 2017278 ~ 2032413 (+) True CI01000112_02017278_02032299
CI01000112_01883455_01914770.mRNA mRNA upstream 195068 1883244 ~ 1914775 (+) True CI01000112_01883455_01914770
CI01000112_01865388_01878028.mRNA mRNA upstream 231655 1865101 ~ 1878188 (+) True CI01000112_01865388_01878028
CI01000112_01831462_01857713.mRNA mRNA upstream 251140 1831462 ~ 1858703 (+) True CI01000112_01831462_01857713
CI01000112_02207728_02210655.mRNA mRNA downstream 93127 2207690 ~ 2210957 (+) True CI01000112_02207728_02210655
CI01000112_02240184_02240792.mRNA mRNA downstream 123106 2237669 ~ 2241243 (+) True CI01000112_02240184_02240792
CI01000112_02261335_02262540.mRNA mRNA downstream 146772 2261335 ~ 2262781 (+) True CI01000112_02261335_02262540
CI01000112_02275641_02277644.mRNA mRNA downstream 161078 2275641 ~ 2278611 (+) True CI01000112_02275641_02277644
CI01000112_02295987_02301298.mRNA mRNA downstream 181336 2295899 ~ 2302593 (+) True CI01000112_02295987_02301298
TU373329 other upstream 876725 1232022 ~ 1233118 (+) True G328456
TU374096 other downstream 503141 2617704 ~ 2618151 (+) False G329125
TU374097 other downstream 503141 2617704 ~ 2618151 (+) False G329125
TU374098 other downstream 503141 2617704 ~ 2618151 (+) True G329125
TU374184 other downstream 805691 2920254 ~ 2931889 (+) True G329194
TU375960 other downstream 2970157 5084720 ~ 5096971 (+) True G330755

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00052221 True 1549 mRNA 0.59 6 NC_007114.7 58430678 ~ 58455289 (-)
bowfin (Amia calva) AMCG00018403 True 5838 mRNA 0.47 5 CM030135.1 9944688 ~ 9960060 (-)