RNA id: CI01000158_01271157_01297723.mRNA


Basic Information

Item Value
RNA id CI01000158_01271157_01297723.mRNA
length 2009
RNA type mRNA
GC content 0.46
exon number 12
gene id CI01000158_01271157_01297723
representative True

Chromosome Information

Item Value
chromosome id CI01000158
NCBI id null
chromosome length 1938735
location 1271157 ~ 1298361 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATACGGCTAGTCGATGACCCCCGCTGTTCGTTTACGTTGCGGGTTGCCCAAAAGTGTCATAGCACTAGCGTGCGTCAGATCTCCATTTCCTCTGAGCCTCATCGCATACTCTTTCTCAAGCTAGAGTGGGCTAAGGATCTTGGATCTGGCTTCATAATCCTTCTGTCCGATGGTGTCTCTGCGTGGAGTGGTGAAGAGGAGGATGTGTCCCGTGAAGCCCAGGAGATCGAGATGGAGCGAGAGCGGTATGTTGGTGACCTGCACCTGGCTTTGACCGGAGAGGGACCGGCAGCGGAGGGGGAGTACAGCTTCCACCTGACACCTGAGAGACCCGGCAGCCCCCTGCTGCAGCTGTCTTATGAGAAGGTGCAGAACGACATCTCGGTGGGCTGTCAATGCCCAAATACAAACAGGCATTTTCTTGAACAGCTGAGGTTGCACGACGCGATGACACAGTGGTATTCCTGCAATGTCAAAAGGATATTACATATTTCACTGGTAATGGTTGGCCATATTTTAGAGAAACACTATGGGCACACGGTCGCTCCGAGGTGGCATGAGGTGAAGTTGAGCCGTCAAGATCAAGAGTCATTTATAGGACAAAAGTGTTTGATTAAGGGACGGTCTCAAGTTCATCTATTTGAGGATCAGAGACTCGCTGTCGTTGTTGGCTCTCATCACAGCGGTTGGCTTGTCTTATCGGTACAAGAGTCCAGGCTGGAAGTCTCTGTGTTTGTCCAGTTCAGGCTCGGTGTGGTGGAGCTGCGGGCGGTGCCTGAGCCCACCGAAGTCATAAGGGAGCTTATTAGTCACAGCCTGGAGCAGAGCACACGTCTACGGGCCAAAAACCAGCACCTGCTTGAGGAGAACCAGAAGCTGAGGAAAGAACAAGAACACATCACCAAAGAGATGGAAAGGTACGTTCAGGGAAAGGAGACGTTGGAGAGAGACCTGTACAGTCGCTTTGTGCTGGTCCTCAATGAGAAGAAAGCCAAACTCAGAGTCCTGCAGGAGAGAGTCAGAGAGCTAGAGGAATCTATAGAAGAGAATCGACTGAGACAGAGCCCTTCGGGCTTCAATTATTGTGCTTTTCCTTTCTCCTCAAGTATGATGCAATGGTTTATGTTTCAGAAGTGTGTGCTTGAGATGCCAGAAAGCAGCCCGATGGACGACAGCCTAAATGACATCACAGATGTGGCCCCCTGCCGCAAACGTCGCCACCGACATCTCCAACAGCTGGAGACTCAAGCCAAACGAGCAGCGCTGGACCAGCGACAGAGATCCAGGCCGCCGTTACGAAACGGGCTCTGCTACCGCGCTAAGACTTTCCAAACTTTAATAGACTTCTGTGGCATGGAGATCTGGCTCTAACCTCTTTAGAGAATAATATCACATATGCCACTTCGTATCACACAAGTGGAGAAATCCAGCTGGAGTCTCTCATTCTGTTCCTGGAATGAGGTTTTTAAACAGCCGTGTGGCTTTGAATGCCTTGGCTAATTACGCACAATTTGAGAGCTGGAACGCTCTTCTAGAACGTGACACAAATTAGTGGTGGTGTATCATGAATGAATCTGCATTTTATGTGGCGTTAAAGGGATAGATCACCCAAATATCCTTTCATCATTTACTCACCCTCATGTCGTTCCAAACCTGTATGACTGTCTCTCTCCACACAAAAGCAGATGTTTTGAAGAATATTCATGTTGTTTTCCATACAATGAAAATAATGGGGACTGAGCCTGTCAAGCATCAAAAATGTCAAATAAATAAATGTCAAAAATAATATATGATGATAATCAAATATATAATGTGCTGTTTATGCATATTTTATTAATGTAATTTTTTTTTTTTTTTTTTGCATTGCTTCAGAAGATTTTAAATACAACACAAAAGCCTACTTTATGAAACTGTTTATTGTACTTTTGTTCTTTTTAGAGCTTGACAGGTCCTGATCACTATTTTTATAGTATGAAAATCAGCAACTCAGACATTAATTTCTTTAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU414657 lncRNA upstream 17515 1253407 ~ 1253642 (+) True G363539
TU414648 lncRNA upstream 23854 1247054 ~ 1247303 (+) True G363531
TU414645 lncRNA upstream 58913 1211903 ~ 1212244 (+) True G363528
TU414569 lncRNA upstream 206851 1064025 ~ 1064306 (+) True G363454
TU414568 lncRNA upstream 208789 1062160 ~ 1062368 (+) True G363453
TU414504 lncRNA downstream 128792 1427153 ~ 1447839 (+) True G363391
TU414503 lncRNA downstream 149940 1448301 ~ 1451463 (+) True G363390
TU414489 lncRNA downstream 153899 1452260 ~ 1453741 (+) True G363378
TU414702 lncRNA downstream 167624 1465985 ~ 1467081 (+) True G363583
TU414713 lncRNA downstream 185825 1484186 ~ 1484718 (+) True G363594
CI01000158_01221423_01241226.mRNA mRNA upstream 29726 1221423 ~ 1241431 (+) True CI01000158_01221423_01241226
CI01000158_01216424_01216750.mRNA mRNA upstream 53920 1215763 ~ 1217237 (+) True CI01000158_01216424_01216750
CI01000158_00983889_00993672.mRNA mRNA upstream 277103 983889 ~ 994054 (+) True CI01000158_00983889_00993672
CI01000158_00955930_00956923.mRNA mRNA upstream 313392 955090 ~ 957765 (+) True CI01000158_00955930_00956923
CI01000158_00923138_00936354.mRNA mRNA upstream 333366 923138 ~ 937791 (+) True CI01000158_00923138_00936354
CI01000158_01309383_01335186.mRNA mRNA downstream 11022 1309383 ~ 1335400 (+) True CI01000158_01309383_01335186
CI01000158_01392749_01393057.mRNA mRNA downstream 94388 1392749 ~ 1393285 (+) True CI01000158_01392749_01393057
CI01000158_01394592_01407483.mRNA mRNA downstream 95313 1393674 ~ 1408189 (+) True CI01000158_01394592_01407483
CI01000158_01442232_01445146.mRNA mRNA downstream 143826 1442187 ~ 1445826 (+) True CI01000158_01442232_01445146
CI01000158_01572487_01576220.mRNA mRNA downstream 273518 1571879 ~ 1576713 (+) True CI01000158_01572487_01576220
TU414795 other downstream 389606 1687967 ~ 1688784 (+) True CI01000158_01687966_01688623

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00004573 True 1641 mRNA 0.48 8 NC_007121.7 43117777 ~ 43184354 (+)