RNA id: CI01000158_01221423_01241226.mRNA


Basic Information

Item Value
RNA id CI01000158_01221423_01241226.mRNA
length 880
RNA type mRNA
GC content 0.49
exon number 6
gene id CI01000158_01221423_01241226
representative True

Chromosome Information

Item Value
chromosome id CI01000158
NCBI id null
chromosome length 1938735
location 1221423 ~ 1241431 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGCTGGTGAGAAAAACTCTGCGTCATGTTACTTGGATGAAAGGACCTTCCGGCTTTGCTGTCAGCTCTTTCTCCAACACTCTGAGACCATCCAGGATGGCTGGAGCTGGGAGCAGATCAAGGGCACTAATGAAGGATTCATGAAGAAGACTGTTCTCACCTCTGTAAAATCAAGCCTGTTGCACAAACAACATGGGTGTTTCATGCAGGCTGAAAACATGGAACTTCTGACAGATGACATTCAGGCAAACGTTGAGGATGAAACGGCTGGAGTTCAGGCAGTATGTGAAATTCATGCTGCGCTGCGCTATGAATACCACGTTCTGTATTCTTGCAGCTATCAGATCCCCGTCCTCTATTTCAGAGCCTCAACGTTAGATGGGAATCCCCTCTCTCTTGAGGAGGTGTGGAGCAATGTTCATCCAAACTATAGACAGAGACTACAGCAGGGACCCTGGGACACGCTGACCCAACAGGAACATCCTTTACTGGGCCAACCGTTTTTCATGCTTCATCCATGTCGCACTGAGGAGTTTATGAAACCTGCTCTGGATTTGGCACAAGCTGAAAACAAAAGGGTGAACTATATCGTGACCTGGCTCAGTGTTGTTGGCCCTGTCGTTGGACTGGACGTCCCATTGAGCTACTGCACTGAGGTGTCCGCTCCAGACTGAAGCTCCATTGGTACCAACCTGCTCTGCTCTTCCTGTCTGTCTCAGACTCCACTGACCCAGAGGATGTGAAGAGGACACCTGTGACCCAGCTGAGGGTCTCAAAGGTCCCAAAGAGGGTTCAAAAGACTTGTTAGCAATGCTTGAACATTCAAGACACCAAGTCTTTCAGAGCATTCCTGAGCTAGCCTGTGAAATTAATGTATTA

Function

GO:

id name namespace
GO:0006497 protein lipidation biological_process

KEGG:

id description
K17888 ATG10L, ATG10; ubiquitin-like-conjugating enzyme ATG10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU414645 lncRNA upstream 9179 1211903 ~ 1212244 (+) True G363528
TU414569 lncRNA upstream 157117 1064025 ~ 1064306 (+) True G363454
TU414568 lncRNA upstream 159055 1062160 ~ 1062368 (+) True G363453
TU414564 lncRNA upstream 163179 1058022 ~ 1058244 (+) True G363449
TU414563 lncRNA upstream 164568 1056644 ~ 1056855 (+) True G363448
TU414648 lncRNA downstream 5623 1247054 ~ 1247303 (+) True G363531
TU414657 lncRNA downstream 11976 1253407 ~ 1253642 (+) True G363539
TU414504 lncRNA downstream 185722 1427153 ~ 1447839 (+) True G363391
TU414503 lncRNA downstream 206870 1448301 ~ 1451463 (+) True G363390
TU414489 lncRNA downstream 210829 1452260 ~ 1453741 (+) True G363378
CI01000158_01216424_01216750.mRNA mRNA upstream 4186 1215763 ~ 1217237 (+) True CI01000158_01216424_01216750
CI01000158_00983889_00993672.mRNA mRNA upstream 227369 983889 ~ 994054 (+) True CI01000158_00983889_00993672
CI01000158_00955930_00956923.mRNA mRNA upstream 263658 955090 ~ 957765 (+) True CI01000158_00955930_00956923
CI01000158_00923138_00936354.mRNA mRNA upstream 283632 923138 ~ 937791 (+) True CI01000158_00923138_00936354
CI01000158_00885015_00891759.mRNA mRNA upstream 329184 885015 ~ 892239 (+) True CI01000158_00885015_00891759
CI01000158_01271157_01297723.mRNA mRNA downstream 29726 1271157 ~ 1298361 (+) True CI01000158_01271157_01297723
CI01000158_01309383_01335186.mRNA mRNA downstream 67952 1309383 ~ 1335400 (+) True CI01000158_01309383_01335186
CI01000158_01392749_01393057.mRNA mRNA downstream 151318 1392749 ~ 1393285 (+) True CI01000158_01392749_01393057
CI01000158_01394592_01407483.mRNA mRNA downstream 152243 1393674 ~ 1408189 (+) True CI01000158_01394592_01407483
CI01000158_01442232_01445146.mRNA mRNA downstream 200756 1442187 ~ 1445826 (+) True CI01000158_01442232_01445146
TU414795 other downstream 446536 1687967 ~ 1688784 (+) True CI01000158_01687966_01688623

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00004570 True 4450 mRNA 0.45 7 NC_007121.7 43039947 ~ 43076207 (+)