RNA id: TU414564


Basic Information

Item Value
RNA id TU414564
length 223
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G363449
representative True

Chromosome Information

Item Value
chromosome id CI01000158
NCBI id null
chromosome length 1938735
location 1058022 ~ 1058244 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CACAAACTCACGCATATGGATAATATGCAAAATGGGTCACACTGTCCCTTTCTCACTTTTCTTTTTACAGATACTGTACATACTTACTGTACCTAAAGCTACAAACAAATGTAAATTACACTATGTCCCTTAAGAAGGGTGTTCTCAGTCTTAGCACACACTTTAATTACAAAGGAAAATGGAAATGGGACAGAGAATTCAATGGTTTCTCTGGGGATTATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU414563 lncRNA upstream 1167 1056644 ~ 1056855 (+) True G363448
TU414497 lncRNA upstream 35547 1021530 ~ 1022475 (+) True G363384
TU414473 lncRNA upstream 41226 1014803 ~ 1016796 (+) True G363369
TU414493 lncRNA upstream 61937 995015 ~ 996085 (+) True G363381
TU414533 lncRNA upstream 85421 972179 ~ 972601 (+) True G363418
TU414568 lncRNA downstream 3916 1062160 ~ 1062368 (+) True G363453
TU414569 lncRNA downstream 5781 1064025 ~ 1064306 (+) True G363454
TU414645 lncRNA downstream 153659 1211903 ~ 1212244 (+) True G363528
TU414648 lncRNA downstream 188810 1247054 ~ 1247303 (+) True G363531
TU414657 lncRNA downstream 195163 1253407 ~ 1253642 (+) True G363539
CI01000158_00983889_00993672.mRNA mRNA upstream 63968 983889 ~ 994054 (+) True CI01000158_00983889_00993672
CI01000158_00955930_00956923.mRNA mRNA upstream 100257 955090 ~ 957765 (+) True CI01000158_00955930_00956923
CI01000158_00923138_00936354.mRNA mRNA upstream 120231 923138 ~ 937791 (+) True CI01000158_00923138_00936354
CI01000158_00885015_00891759.mRNA mRNA upstream 165783 885015 ~ 892239 (+) True CI01000158_00885015_00891759
CI01000158_00878419_00882435.mRNA mRNA upstream 175587 878108 ~ 882435 (+) True CI01000158_00878419_00882435
CI01000158_01216424_01216750.mRNA mRNA downstream 157519 1215763 ~ 1217237 (+) True CI01000158_01216424_01216750
CI01000158_01221423_01241226.mRNA mRNA downstream 163179 1221423 ~ 1241431 (+) True CI01000158_01221423_01241226
CI01000158_01271157_01297723.mRNA mRNA downstream 212913 1271157 ~ 1298361 (+) True CI01000158_01271157_01297723
CI01000158_01309383_01335186.mRNA mRNA downstream 251139 1309383 ~ 1335400 (+) True CI01000158_01309383_01335186
CI01000158_01392749_01393057.mRNA mRNA downstream 334505 1392749 ~ 1393285 (+) True CI01000158_01392749_01393057
TU414795 other downstream 629723 1687967 ~ 1688784 (+) True CI01000158_01687966_01688623

Expression Profile