RNA id: TU414497


Basic Information

Item Value
RNA id TU414497
length 271
lncRNA type antisense_over
GC content 0.50
exon number 2
gene id G363384
representative True

Chromosome Information

Item Value
chromosome id CI01000158
NCBI id null
chromosome length 1938735
location 1021530 ~ 1022475 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CACCTTCAGGAGCACCTTCTTACGAGAAGCCATCCTTGTGGACTAAACTGTGCCTGATTTCTGAGGAGAAATCCCACCGTCGGCGCAACAATCTTCTGCTGTCATACAACAAAAACAACCAAACTTGACACCTCCACCGTCTCTGATCAGCTCTGGACACACTCTGTGGGTCGTGTTGCGTGTTTTTGGATGGTTGTCACGGTCAGTTCAGCACATCCGTGTGTAATAATGAGCCGCAAACACTCCCTCCCTTGACTCAGCTCAATACTCG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU414473 lncRNA upstream 4734 1014803 ~ 1016796 (+) True G363369
TU414493 lncRNA upstream 25445 995015 ~ 996085 (+) True G363381
TU414533 lncRNA upstream 48929 972179 ~ 972601 (+) True G363418
TU414525 lncRNA upstream 124682 896617 ~ 896848 (+) True G363410
TU414458 lncRNA upstream 189927 831257 ~ 831603 (+) True G363354
TU414563 lncRNA downstream 34169 1056644 ~ 1056855 (+) True G363448
TU414564 lncRNA downstream 35547 1058022 ~ 1058244 (+) True G363449
TU414568 lncRNA downstream 39685 1062160 ~ 1062368 (+) True G363453
TU414569 lncRNA downstream 41550 1064025 ~ 1064306 (+) True G363454
TU414645 lncRNA downstream 189428 1211903 ~ 1212244 (+) True G363528
CI01000158_00983889_00993672.mRNA mRNA upstream 27476 983889 ~ 994054 (+) True CI01000158_00983889_00993672
CI01000158_00955930_00956923.mRNA mRNA upstream 63765 955090 ~ 957765 (+) True CI01000158_00955930_00956923
CI01000158_00923138_00936354.mRNA mRNA upstream 83739 923138 ~ 937791 (+) True CI01000158_00923138_00936354
CI01000158_00885015_00891759.mRNA mRNA upstream 129291 885015 ~ 892239 (+) True CI01000158_00885015_00891759
CI01000158_00878419_00882435.mRNA mRNA upstream 139095 878108 ~ 882435 (+) True CI01000158_00878419_00882435
CI01000158_01216424_01216750.mRNA mRNA downstream 193288 1215763 ~ 1217237 (+) True CI01000158_01216424_01216750
CI01000158_01221423_01241226.mRNA mRNA downstream 198948 1221423 ~ 1241431 (+) True CI01000158_01221423_01241226
CI01000158_01271157_01297723.mRNA mRNA downstream 248682 1271157 ~ 1298361 (+) True CI01000158_01271157_01297723
CI01000158_01309383_01335186.mRNA mRNA downstream 286908 1309383 ~ 1335400 (+) True CI01000158_01309383_01335186
CI01000158_01392749_01393057.mRNA mRNA downstream 370274 1392749 ~ 1393285 (+) True CI01000158_01392749_01393057
TU414795 other downstream 665492 1687967 ~ 1688784 (+) True CI01000158_01687966_01688623

Expression Profile