RNA id: CI01000189_00693840_00694391.mRNA


Basic Information

Item Value
RNA id CI01000189_00693840_00694391.mRNA
length 2267
RNA type mRNA
GC content 0.45
exon number 1
gene id CI01000189_00693840_00694391
representative True

Chromosome Information

Item Value
chromosome id CI01000189
NCBI id null
chromosome length 4726117
location 693701 ~ 695967 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTATTAATGAATGGAGCGTCTCACAGGCAGCAAAACGGTGCTTGAGCTCTCTCTCCCTGGACGGAGAAGGCAGCACAAACAGAATAGTAGGAGCACTTCGCACCTCGACAGAAAGCAACTGCAGCAGCCGTGTGCAAATATGAAGAAGCACCAGCGTGAGGATGAGAACTCTGACAGCGATGCAGAGCAGGATTCTTCTCTCCCTTCTGCGATGGATGTCCATCCCTCTTCTTCTTCATCCAACTTCCTCCTGCCCTCATCTTCTCAGCGGAGATCCATCTCCATGGGGGACTTTCGGAGAGTCCCTGCTGGACAGGCAGGCTCCGAGCCCCCTTCTACAGCCTCCACGGCACCCTCTTCCAAGCTCGTTACCCCCAGCTCAAGTATGGAGTTTGAGGCAGCTCGTCGACGCCTCCTGGAGGTGGAGGAGCGCCAGCGTGTCATCAGGGAGATGGAGAGACGACTGGAGGAGCTGAGGGAGGTGTTTGTGCGCTCCGAGCAGGAGGCGGTGGAACACGGGGAGCTGGTGGCGCGCATCACCGCTGCTGCCCAGCAAGGCGAACTATACGTAGCGGAAAACGGACAGCGGCTGAAAAAAGGATTGCGGTTTAAACGGCACAGGCCCACCATTGTCTTCTCCTCCATGCTGGGGCTGAGAACGTGCCTCCCTTGGCCTGTCAAACTCAAATAGCGAAACAGCTGCTACTTACTTGCAAGATGGTCCTTCACTGCTCACAACAGCATCACTCTCTTCAGATCCAAGGATGTCCAAGGCTCATTTTCTACTCTCTCTTAGTCAGGAAATGCTGAAACTTTTGCTTCATCTGTATATTTCATTAACTGGGATTTTAGAGGGTGCTTCATTTGAGCACATCAAAATGCCGCAGGCCTCATATTTGCTGCTTGAACAACCCAAGAAAGACACTGGGGATTTGCTGTAACGTGTGTGAACTCTGTGCATGTGTTACACTTCATGTCGCTTAGTGTGCGTGAGAACGTGTGAATGTCAGAGAGGAGGCAGAAGTGTGCTATTCATCCAGAAGAAGTCACTCAGGTGTCCTGTGATTGGTCCGAAATGAAAGGCAATCTTCCATCTGCAGTAAGGTGAAACAGAGCGTTTGGGCTAAAGGCCCGTTCACACCAAGAGCAATACCTACAACAATAACTATATTAGCGTCCACACCAATGGTTGTTATCGTTCTGTTTATAATAAGCGCGCATTGCATTTGTCGCTTAGCGCTTTATATGTTCAAGCTCTTTAAAGTCGGATGGATTCTGATTAGCTGACAATGTTTTTATCATTCACCAACTGGAAAAAAATCACTGAAAGTGATTCCACGACATTATCGTTGTCGTGGTGTGGACTTCATTATTCCATAGATTTAGAATGATTATTAAAACTTTGTAGTTATCGTTATAGTTATTGTTATCATCTTGGTGTGAACTGTCCTTGAAGTCCCAAGAGACAGATGAACTGTACATGATTGTACAATTTGTGCACATATACTGGGGACATGCGCTTTTGTTCTCGACTTGTTCGTTTAGGGTGCCCATTGGGCTTTTGTGGATGGAGAAGAGGAGCAGTGATTTCTCTCTCTTCTCTGTCAGCATTCCATCTGTGGCCTCTTTGTCGCCTAGCAACCAGGACCTGACTTTCATTTCCTTCAGAATGTATTTGACATCAATAGATCATCCAAAACTACAGCTCATGAATGACAGGCAGAGGACATTTTGAGATTATTATTGTGTGATTTAATTAGCTGCAGATCGCTAGTTAGTTTGAGCATACACTACTAAGAATGCATTCAAATATGTAGTTAAAATATGTAAGCAGAAAGATAATGGCTGTGTTGTAAAAGTAAGTCTCAGTCAATCAATGACCAAGGATTTCAGGATGGCTTCTAAAGCATTATGTCATGTGGAATGATTGCGAACTTGTGAGAGGTAACCAAACAAATATTTAATGACTACAAATGCTTATTTCTTGACGGAAAAGTCATGCGTTATGAATGTACATTCATATATAATTAACCACTCCATCAGATACCATTTTCAATCTTTCCACCAAACACATAGAACTGAGGAATATCTTAAGCAGCGTAAGATCAAGAGATTCAAAAACCAACCAGATGAAGGCATTTTAGTCGGGGTGTTAAGCTAACATTGGTTTCAGATTTGATTCGATGCCTTCCTACCTCCGTATGCTGCATACAAATGCTGCTTTTTTCAGGTTTCAGACACAGCCAGTATCACTCGTTTGATAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU433945 lncRNA upstream 76223 616592 ~ 617478 (+) True G379582
TU433993 lncRNA upstream 114382 578385 ~ 579319 (+) True G379627
TU433962 lncRNA upstream 219677 473810 ~ 474024 (+) True G379599
TU433955 lncRNA upstream 233270 459307 ~ 460431 (+) True G379592
TU433911 lncRNA upstream 277653 415750 ~ 416048 (+) True G379561
TU433926 lncRNA downstream 64579 760546 ~ 764103 (+) True G379570
TU434075 lncRNA downstream 99222 795189 ~ 795509 (+) True G379695
TU434086 lncRNA downstream 146420 842387 ~ 852067 (+) True G379700
TU434194 lncRNA downstream 279098 975065 ~ 976610 (+) True G379780
TU434202 lncRNA downstream 298882 994849 ~ 995109 (+) True G379786
CI01000189_00671005_00685458.mRNA mRNA upstream 7430 671005 ~ 686271 (+) True CI01000189_00671005_00685458
CI01000189_00613239_00646678.mRNA mRNA upstream 46753 611599 ~ 646948 (+) True CI01000189_00613239_00646678
CI01000189_00552262_00553370.mRNA mRNA upstream 140215 550833 ~ 553486 (+) True CI01000189_00552262_00553370
CI01000189_00537167_00546397.mRNA mRNA upstream 146394 537167 ~ 547307 (+) True CI01000189_00537167_00546397
CI01000189_00448469_00457564.mRNA mRNA upstream 235516 448469 ~ 458185 (+) True CI01000189_00448469_00457564
CI01000189_00877464_00886363.mRNA mRNA downstream 181497 877464 ~ 886915 (+) True CI01000189_00877464_00886363
CI01000189_00893376_00898271.mRNA mRNA downstream 197409 893376 ~ 898402 (+) True CI01000189_00893376_00898271
CI01000189_00968023_00981490.mRNA mRNA downstream 272056 968023 ~ 981814 (+) True CI01000189_00968023_00981490
CI01000189_00987665_01058757.mRNA mRNA downstream 291558 987525 ~ 1058981 (+) False CI01000189_00987665_01058757
CI01000189_01068817_01136608.mRNA mRNA downstream 372850 1068817 ~ 1136608 (+) True CI01000189_01068817_01136608
TU433965 other upstream 196793 475615 ~ 496908 (+) True G379600
TU434221 other downstream 316579 1012546 ~ 1012903 (+) False G379799
TU434222 other downstream 316579 1012546 ~ 1012834 (+) True G379799
TU434037 other downstream 320064 1016031 ~ 1059385 (+) True CI01000189_00987665_01058757
TU435687 other downstream 2143254 2839221 ~ 2841125 (+) True G381120
TU436136 other downstream 2929769 3625736 ~ 3626855 (+) True G381491

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00010942 True 483 mRNA 0.69 1 CM030133.1 5283816 ~ 5284298 (+)