RNA id: CI01000189_04103153_04114542.mRNA


Basic Information

Item Value
RNA id CI01000189_04103153_04114542.mRNA
length 2653
RNA type mRNA
GC content 0.51
exon number 14
gene id CI01000189_04103153_04114542
representative True

Chromosome Information

Item Value
chromosome id CI01000189
NCBI id null
chromosome length 4726117
location 4103153 ~ 4115337 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGGTCTGGACCAGCATCCTCTTCCAGAGGAGGCAGATGATGATACTGTGCATCCTCCCAGACTCCTGCATGATCTACGGGAGGACATGTCCTCATACAGCAGGTCTGAGGAGTCCTCTGCATCATCCATCAGATCAGGATGTCAGACACTCACCACAGATGACACCGCTCAGTCTTGGTCTGGTATCCATAGTTACACAGGAACTGGCATCTCTACAGAACGCAGCTCTGTCTTTTCGTGGGGCTATGATGAATTTGATAAAGCCGCTTCCAGGCAGGTCCAGCAGATGTTTGAAGAGATTGAAGAACTGTTGTATGAGAGGAAATGTGAAACTCAGCTCAAAGGCCTGCAGGAAGAGTGTCAAGAGTGGGCTTCACGATTCCCTCATCTACGGATCCTCGGAGCTCAGCTGGTGTGTCCTACAGATGAAGGATTCCAGTGGTACGCCACACCAGCTCACACGCCCATCCCCTCCAGTGGCGGCCAGAGCAAAGAGATAACCGCCAATGAGTTGTGTGTGCAGGGTCGGAGGGCTGTTTTGTGTCGGCCCTCTGTGGAGGTGACCCACCCTAGTGTCACGCCCAGCTGTAACCATGGAGATGAGTTGCCCAGGGTGATTGAGGCCGAGGGGCTGATAGAAGAGTATCTCGCTTTCGACTGCAGGGACCTGGATGAGGAATGGGAACGTGAGTATGTGAGCAGACGGCGGAGGCGCTGCCTGCCCCCTGTCTCGCCCTATCGCTGTCGTCGAGAGGCGGTGCTTGATCTGCTGTTTGATGATGTGTGGCGTGAGCTCATTGGCTGGATGGAGGAGCTTGTACGTAGGCATTGGGAGGGTTCTGTGTCAGATGATGAGAAGAATGCGGTGGCCCTCAGCCCTGCGTGCCCTGATACCCAGAATCCTTTTTTGCTGCTGTCCAATGTCTCACCAGTGCTTCCTCCACTGTCACAGAGCAGAACACAGCAGCTCACAGCCAGCTTGCAGGCCCAGACCAGTCGAGTGCCTGTAGGGGCGGCGGTTGCTCATCACAATCTCAATGACCTCATCATGATACATGGCATTCCACTGCAGCAGAGGAACCTGGGAACTCTGGACCGAATAACTCAGGACTCTGAGGAGAAAGTGTCTCATCGTCCCGGGTCTAGTGTCATACCCACCAGTAAACCTCGGCCCCGTCGTGCACTAGAACAAAGCACCTCCTCCTTGACTCGCCCCCCTCAGTCGGCACGGCGACGGAACCCACCTCCTCGCACTCTGATGCCATTGACGTCCAGTGTAACGCAGCCCATCACAACTGGCTCCATGGAAGAGGTGGTTAGAGGCACAAGATTGACGACCGCCAGCGATCGTTTGGCCTCTCCTCCAATGCCTCTCAGCAGAAACACACTTCTCCCTCCCATCGGCACAGGAGACACAGACCACACCTACCCCGGACAGCACTCACGGCTTATGCAGAAGCAGAGAGGCTCCTCCAGTCGTGCACATAGTGCAGTGACTGACGAGGGTGTCAGTCTGCAGCCCCGGGACAAAATGCACTTGCTGGACGTGTTTTCCAGACCCAACACCACACACACCTTTAGGTCAGACACTCCTTACCGCCGTTCATTTACTGGAATAGACAATGCCGGGCAGGGACGACCTGGCAGAGCGTCTGTTGGCGTAGATTCTCTGGGAATTGGTGTGACTGGAATCAGTTTGGGCATCAGCAGCTCCTCCTTCATAGACTCATTTTCCCATCATCCCCTTGGCCACTTCCCCATTGAGCATGAGGAGGAGCCAGATGCAAAAGCTCAGCCCCCAGCACGTTCCCACAACAAAGGCGGTACGACGGCACGCAGTAGCAGACCAGGGCTTTAACACAAAATACATGTACACACACACACACACACAATCTCCCTCACCTTCTTGAACCAAACTCACCTCAGCACTGACGCAACTTTTCTTCAGTACTGACAGACGCTTTATACGTCTGCTGGACTTTTGTATGACACGCCGTTTGGGCGTGGACTTTATTTATGGCCGCTGTTGTTATTATTAATAGTATTGTTATTCATGTTGTTGTTTGAAATTTTCTAAAATCCTATTTTTGTATATTGGACTATTCAGCTTCATATGGCTGCCAAATACAGGAAACTGTCTATCCATTACATCTGTAGATGTACTGTACATGCTGTACTGTATGGAGTAACAACTTTTGGTTTTCCCTAAAGACGTCTCTATGAGGCCTACATGGAGTTTCTATGCAGGTTCATACAATCAGGGTGTTTAAATTGCCTGAATGTTGCCCGCACTGGATTGTTTAAGACTATTAGATTGTGGAACCTGCTATGGAAGATTATACTGTCTATATCCTAGACGGATGTTCCATCGTGATGCAATTCCAACAGCTTTATCCACAATCATGGACAATAGGTGTGTAAGAATTCTTATGAAGATTCCAAGGTTATAAGCCTTTTTTATCATGATTCCATGATCATGGAATGTTCAATAGCATTCAAACTGACTCCAAGGTCTTATTCCCAGCAGAGCTTCAGTGTAGAACCTCCATGACCCTGTTTTTCAGAGATACACTGAAATTCTGGAAGTATATCTGCAATACGAGTGCGGGACAGTACAATAGTACAGCTTACATAATGACGGGTGAAAAGAGGA

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU436283 lncRNA upstream 14963 4085628 ~ 4088190 (+) True G381627
TU436292 lncRNA upstream 46290 4056378 ~ 4056863 (+) True G381636
TU436290 lncRNA upstream 50830 4052099 ~ 4052323 (+) True G381634
TU436289 lncRNA upstream 52059 4050784 ~ 4051094 (+) True CI01000189_04049709_04050966
TU436278 lncRNA upstream 55989 4046031 ~ 4047164 (+) True G381622
TU436349 lncRNA downstream 154006 4269343 ~ 4269575 (+) True G381681
TU436350 lncRNA downstream 154681 4270018 ~ 4270288 (+) True G381682
TU436428 lncRNA downstream 398146 4513483 ~ 4514076 (+) True G381756
TU436375 lncRNA downstream 461374 4576711 ~ 4577189 (+) True CI01000189_04576234_04577598
TU436376 lncRNA downstream 463162 4578499 ~ 4578665 (+) True G381705
CI01000189_04099205_04099517.mRNA mRNA upstream 3429 4099205 ~ 4099724 (+) True CI01000189_04099205_04099517
CI01000189_04049709_04050966.mRNA mRNA upstream 51454 4049709 ~ 4051699 (+) False CI01000189_04049709_04050966
CI01000189_04038185_04043995.mRNA mRNA upstream 58559 4038185 ~ 4044594 (+) True CI01000189_04038185_04043995
CI01000189_03967133_03967547.mRNA mRNA upstream 135479 3966981 ~ 3967674 (+) True CI01000189_03967133_03967547
CI01000189_03884911_03893327.mRNA mRNA upstream 208574 3884911 ~ 3894579 (+) True CI01000189_03884911_03893327
CI01000189_04170533_04184962.mRNA mRNA downstream 55196 4170533 ~ 4185273 (+) True CI01000189_04170533_04184962
CI01000189_04576234_04577598.mRNA mRNA downstream 460819 4576156 ~ 4578035 (+) False CI01000189_04576234_04577598
CI01000189_04674916_04701633.mRNA mRNA downstream 559579 4674916 ~ 4701679 (+) True CI01000189_04674916_04701633
TU436136 other upstream 476298 3625736 ~ 3626855 (+) True G381491
TU435687 other upstream 1262028 2839221 ~ 2841125 (+) True G381120
TU434037 other upstream 3043768 1016031 ~ 1059385 (+) True CI01000189_00987665_01058757
TU434221 other upstream 3090250 1012546 ~ 1012903 (+) False G379799
TU436323 other downstream 5050 4120387 ~ 4122344 (+) True G381655

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00023933 False 3120 mRNA 0.49 15 NC_007128.7 26589879 ~ 26604946 (-)