Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU433945 |
| length | 830 |
| lncRNA type | intronic |
| GC content | 0.38 |
| exon number | 2 |
| gene id | G379582 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000189 |
| NCBI id | null |
| chromosome length | 4726117 |
| location | 616592 ~ 617478 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU433993 | lncRNA | upstream | 37273 | 578385 ~ 579319 (+) | True | G379627 |
| TU433962 | lncRNA | upstream | 142568 | 473810 ~ 474024 (+) | True | G379599 |
| TU433955 | lncRNA | upstream | 156161 | 459307 ~ 460431 (+) | True | G379592 |
| TU433911 | lncRNA | upstream | 200544 | 415750 ~ 416048 (+) | True | G379561 |
| TU433910 | lncRNA | upstream | 202101 | 414240 ~ 414491 (+) | True | G379560 |
| TU433926 | lncRNA | downstream | 143068 | 760546 ~ 764103 (+) | True | G379570 |
| TU434075 | lncRNA | downstream | 177711 | 795189 ~ 795509 (+) | True | G379695 |
| TU434086 | lncRNA | downstream | 224909 | 842387 ~ 852067 (+) | True | G379700 |
| TU434194 | lncRNA | downstream | 357587 | 975065 ~ 976610 (+) | True | G379780 |
| TU434202 | lncRNA | downstream | 377371 | 994849 ~ 995109 (+) | True | G379786 |
| CI01000189_00552262_00553370.mRNA | mRNA | upstream | 63106 | 550833 ~ 553486 (+) | True | CI01000189_00552262_00553370 |
| CI01000189_00537167_00546397.mRNA | mRNA | upstream | 69285 | 537167 ~ 547307 (+) | True | CI01000189_00537167_00546397 |
| CI01000189_00448469_00457564.mRNA | mRNA | upstream | 158407 | 448469 ~ 458185 (+) | True | CI01000189_00448469_00457564 |
| CI01000189_00438982_00445216.mRNA | mRNA | upstream | 170947 | 438982 ~ 445645 (+) | True | CI01000189_00438982_00445216 |
| CI01000189_00322834_00332685.mRNA | mRNA | upstream | 283842 | 322834 ~ 332750 (+) | True | CI01000189_00322834_00332685 |
| CI01000189_00671005_00685458.mRNA | mRNA | downstream | 53527 | 671005 ~ 686271 (+) | True | CI01000189_00671005_00685458 |
| CI01000189_00693840_00694391.mRNA | mRNA | downstream | 76223 | 693701 ~ 695967 (+) | True | CI01000189_00693840_00694391 |
| CI01000189_00877464_00886363.mRNA | mRNA | downstream | 259986 | 877464 ~ 886915 (+) | True | CI01000189_00877464_00886363 |
| CI01000189_00893376_00898271.mRNA | mRNA | downstream | 275898 | 893376 ~ 898402 (+) | True | CI01000189_00893376_00898271 |
| CI01000189_00968023_00981490.mRNA | mRNA | downstream | 350545 | 968023 ~ 981814 (+) | True | CI01000189_00968023_00981490 |
| TU433965 | other | upstream | 119684 | 475615 ~ 496908 (+) | True | G379600 |
| TU434221 | other | downstream | 395068 | 1012546 ~ 1012903 (+) | False | G379799 |
| TU434222 | other | downstream | 395068 | 1012546 ~ 1012834 (+) | True | G379799 |
| TU434037 | other | downstream | 398553 | 1016031 ~ 1059385 (+) | True | CI01000189_00987665_01058757 |
| TU435687 | other | downstream | 2221743 | 2839221 ~ 2841125 (+) | True | G381120 |
| TU436136 | other | downstream | 3008258 | 3625736 ~ 3626855 (+) | True | G381491 |
