RNA id: TU436464


Basic Information

Item Value
RNA id TU436464
length 227
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G381792
representative True

Chromosome Information

Item Value
chromosome id CI01000189
NCBI id null
chromosome length 4726117
location 4626722 ~ 4626948 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAGCTCCCTGTCTTGAACTCGGGTCAAACATCTACTATCATCTGCTGTCTCACACACTTCAAAATAAATACAATTAATGAACAGAGCGGAGATATTTAAAAACTATATACAAGGCACTGTTAACGTGTTCACCTTGAGATCAACGCCCTGAAACTTGGCATGTTTTCTCAGACTGTTCTGTTGTTCATGTGTACTAAGTTTCGTGAAGTCTGGACATTGCATTCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU436458 lncRNA upstream 30005 4596476 ~ 4596717 (+) True G381786
TU436376 lncRNA upstream 48057 4578499 ~ 4578665 (+) True G381705
TU436375 lncRNA upstream 49533 4576711 ~ 4577189 (+) True CI01000189_04576234_04577598
TU436428 lncRNA upstream 112646 4513483 ~ 4514076 (+) True G381756
TU436350 lncRNA upstream 356434 4270018 ~ 4270288 (+) True G381682
TU436484 lncRNA downstream 41180 4668128 ~ 4673372 (+) False G381808
TU436485 lncRNA downstream 41180 4668128 ~ 4670656 (+) False G381808
TU436483 lncRNA downstream 43396 4670344 ~ 4673372 (+) True G381808
CI01000189_04576234_04577598.mRNA mRNA upstream 48687 4576156 ~ 4578035 (+) False CI01000189_04576234_04577598
CI01000189_04170533_04184962.mRNA mRNA upstream 441449 4170533 ~ 4185273 (+) True CI01000189_04170533_04184962
CI01000189_04103153_04114542.mRNA mRNA upstream 511385 4103153 ~ 4115337 (+) True CI01000189_04103153_04114542
CI01000189_04099205_04099517.mRNA mRNA upstream 526998 4099205 ~ 4099724 (+) True CI01000189_04099205_04099517
CI01000189_04049709_04050966.mRNA mRNA upstream 575023 4049709 ~ 4051699 (+) False CI01000189_04049709_04050966
CI01000189_04674916_04701633.mRNA mRNA downstream 47968 4674916 ~ 4701679 (+) True CI01000189_04674916_04701633
TU436323 other upstream 504378 4120387 ~ 4122344 (+) True G381655
TU436136 other upstream 999867 3625736 ~ 3626855 (+) True G381491
TU435687 other upstream 1785597 2839221 ~ 2841125 (+) True G381120
TU434037 other upstream 3567337 1016031 ~ 1059385 (+) True CI01000189_00987665_01058757
TU434222 other upstream 3613888 1012546 ~ 1012834 (+) True G379799

Expression Profile