RNA id: TU436483


Basic Information

Item Value
RNA id TU436483
length 772
lncRNA type antisense_over
GC content 0.51
exon number 3
gene id G381808
representative True

Chromosome Information

Item Value
chromosome id CI01000189
NCBI id null
chromosome length 4726117
location 4668128 ~ 4673372 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTGTGGGGTATAAAAATACCCCAAATTATTTTACTCACCATCCTGAATTCTGCCAGCCAGAGCCTCTGAGCTGAACCCTGCAAACACCACAGTGTGTACAGCACCGATACGGGCACAGGCCAACATGGCTGCTACTGCCATGGGAGACACAGGCATGTAGATGGCCACCCTCTCTCCCCTCTGGACCCCATGACTTTTCAATGCATTGGCAAGGCGACAGGTCATCTCCAGAAGCTCCCTGTATGTGATCCTTTCCTCTGTGCCAGGTTCATCTTTCTCCCAAATCAAGGCCACTCTGTTTGGATCCTTTGCCACGTGTACATCCAAACAATTCTCCGAGACATTAAGTTGCCCTCCAAGAAACCAGTTGATTTTCCCGCTGGAGAGATCACAGTGCGTCACTTGATCGAAAGGTTTGGTCCATGCCAGCCTTTCCTTGGCAATGGATCCCCAGAAAGTTTCTGGGTCTTTGATTGACATTTCATATAATTCTGCGTAGGTCTTTCCAGCGAGATGCGAGCTGAGGTCCGGTTGAGCCGCGCTGATGCTGCTGGTGGACTGAGAGTGAGACCTCGCATGACACCGTGAGATGAACGCAACACTTCTGCGCAAACATTTCTTGTTCCTAAAGACAACGTTTCCCCTGGCCAAAGAATTCAGCAAACTTGTGCCCACGCGTCCAGCCATTATTCCTCCCAGTCCGTGCTGGAGTGAAGTTTGCTCAAGTTTCCACAGCCCGTGACTGTTCCTCCGAAAAGAGGGAGGAGGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU436464 lncRNA upstream 43396 4626722 ~ 4626948 (+) True G381792
TU436458 lncRNA upstream 73627 4596476 ~ 4596717 (+) True G381786
TU436376 lncRNA upstream 91679 4578499 ~ 4578665 (+) True G381705
TU436375 lncRNA upstream 93155 4576711 ~ 4577189 (+) True CI01000189_04576234_04577598
TU436428 lncRNA upstream 156268 4513483 ~ 4514076 (+) True G381756
CI01000189_04576234_04577598.mRNA mRNA upstream 92309 4576156 ~ 4578035 (+) False CI01000189_04576234_04577598
CI01000189_04170533_04184962.mRNA mRNA upstream 485071 4170533 ~ 4185273 (+) True CI01000189_04170533_04184962
CI01000189_04103153_04114542.mRNA mRNA upstream 555007 4103153 ~ 4115337 (+) True CI01000189_04103153_04114542
CI01000189_04099205_04099517.mRNA mRNA upstream 570620 4099205 ~ 4099724 (+) True CI01000189_04099205_04099517
CI01000189_04049709_04050966.mRNA mRNA upstream 618645 4049709 ~ 4051699 (+) False CI01000189_04049709_04050966
CI01000189_04674916_04701633.mRNA mRNA downstream 1544 4674916 ~ 4701679 (+) True CI01000189_04674916_04701633
TU436323 other upstream 548000 4120387 ~ 4122344 (+) True G381655
TU436136 other upstream 1043489 3625736 ~ 3626855 (+) True G381491
TU435687 other upstream 1829219 2839221 ~ 2841125 (+) True G381120
TU434037 other upstream 3610959 1016031 ~ 1059385 (+) True CI01000189_00987665_01058757
TU434222 other upstream 3657510 1012546 ~ 1012834 (+) True G379799

Expression Profile