RNA id: TU473877


Basic Information

Item Value
RNA id TU473877
length 211
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G412566
representative True

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 6227080 ~ 6227290 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTCTAGCATGTTATATGTTTGGCAACAGTTCTTCTAACCCTAACTGATGGAGTGTGTAGGTTTTTATTTCTTAAACAACCATGTAGAAAGACACATCATGGCCATATTCCAGGATGACACCGCTATGATTCATCAGGCTCAAATTGTGAAAGAATTATTGTTGTGAGAGAGCATAAAGAATCATTTTCACTCAAGAATTGGCTCTAGAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU473862 lncRNA downstream 15219 6211653 ~ 6211861 (-) True G412551
TU473861 lncRNA downstream 17010 6209614 ~ 6210070 (-) True G412550
TU473839 lncRNA downstream 36619 6190011 ~ 6190461 (-) True G412528
TU473832 lncRNA downstream 42950 6183784 ~ 6184130 (-) True G412521
TU473828 lncRNA downstream 46970 6179702 ~ 6180110 (-) True G412517
TU473882 lncRNA upstream 2568 6229858 ~ 6230279 (-) True G412571
TU473891 lncRNA upstream 13325 6240615 ~ 6240949 (-) True G412580
TU473895 lncRNA upstream 18315 6245605 ~ 6245806 (-) True G412584
TU473901 lncRNA upstream 23050 6250340 ~ 6250633 (-) True G412590
TU473915 lncRNA upstream 37056 6264346 ~ 6264648 (-) True G412604
CI01000300_06039087_06039798.mRNA mRNA downstream 186210 6038932 ~ 6040870 (-) True CI01000300_06039087_06039798
CI01000300_05982822_06013144.mRNA mRNA downstream 213936 5982379 ~ 6013144 (-) True CI01000300_05982822_06013144
CI01000300_05966800_05976695.mRNA mRNA downstream 250385 5966112 ~ 5976695 (-) True CI01000300_05966800_05976695
CI01000300_05962858_05963880.mRNA mRNA downstream 262954 5962834 ~ 5964126 (-) True CI01000300_05962858_05963880
CI01000300_05956128_05961938.mRNA mRNA downstream 265142 5956014 ~ 5961938 (-) True CI01000300_05956128_05961938
CI01000300_06282739_06327586.mRNA mRNA upstream 55449 6282739 ~ 6327586 (-) True CI01000300_06282739_06327586
CI01000300_06347127_06393685.mRNA mRNA upstream 119647 6346937 ~ 6393685 (-) True CI01000300_06347127_06393685
CI01000300_06434048_06444297.mRNA mRNA upstream 206399 6433689 ~ 6444297 (-) True CI01000300_06434048_06444297
CI01000300_06445229_06453282.mRNA mRNA upstream 217869 6445159 ~ 6453282 (-) True CI01000300_06445229_06453282
CI01000300_06557191_06577750.mRNA mRNA upstream 329721 6557011 ~ 6578140 (-) True CI01000300_06557191_06577750
TU473866 other downstream 11501 6214920 ~ 6215579 (-) True G412555
TU473685 other downstream 465891 5711685 ~ 5761189 (-) True G412378
TU472166 other downstream 1831959 4390320 ~ 4395121 (-) True G411012
TU471625 other downstream 2144978 4080204 ~ 4082102 (-) True G410508
TU471627 other downstream 2146541 4076764 ~ 4080539 (-) True CI01000300_04075307_04079312
TU474008 other upstream 425708 6652998 ~ 6690333 (-) True G412681
TU474529 other upstream 1919242 8146532 ~ 8146889 (-) True G413140
TU475129 other upstream 2742158 8969448 ~ 8976000 (-) True G413664
TU476061 other upstream 3430759 9658049 ~ 9660805 (-) False G414498
TU476052 other upstream 3431697 9658987 ~ 9660805 (-) False G414498

Expression Profile