RNA id: TU473832


Basic Information

Item Value
RNA id TU473832
length 347
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G412521
representative True

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 6183784 ~ 6184130 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGCACAAATACTTGGCAGTGTTTTACTCCACAGTGCTTGACAGTGTTGTACTCCATATATGATGTTCGGGAGGAGCAAATTCAAATGATCTACCCAACCAGCATAAGAGGAGGCCTAGGTAGCCAACTCACCTATGTTCTTCGACAGTTTTTCTGCATCCCTTCACCACCCCGTCTCCTCATACTTGCCTGGTTACTATCCTAACCAAAGATACGGGGGAGTACTCTGGGTTCGGGCAATATTCCGAGCTCGGAGCTCTGCCCAGGACAGCACGCCAAATACTCATACTTTTTATTCTATCTAATCTTTTGTAAGTGTGAACTCGTGAAAATCCATATGGACACCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU473828 lncRNA downstream 3674 6179702 ~ 6180110 (-) True G412517
TU473813 lncRNA downstream 22396 6160884 ~ 6161388 (-) True G412502
TU473791 lncRNA downstream 49051 6134482 ~ 6134733 (-) True G412480
TU473746 lncRNA downstream 56911 6048237 ~ 6126873 (-) True G412436
TU473758 lncRNA downstream 88900 6094555 ~ 6094884 (-) True G412448
TU473839 lncRNA upstream 5881 6190011 ~ 6190461 (-) True G412528
TU473861 lncRNA upstream 25484 6209614 ~ 6210070 (-) True G412550
TU473862 lncRNA upstream 27523 6211653 ~ 6211861 (-) True G412551
TU473877 lncRNA upstream 42950 6227080 ~ 6227290 (-) True G412566
TU473882 lncRNA upstream 45728 6229858 ~ 6230279 (-) True G412571
CI01000300_06039087_06039798.mRNA mRNA downstream 142914 6038932 ~ 6040870 (-) True CI01000300_06039087_06039798
CI01000300_05982822_06013144.mRNA mRNA downstream 170640 5982379 ~ 6013144 (-) True CI01000300_05982822_06013144
CI01000300_05966800_05976695.mRNA mRNA downstream 207089 5966112 ~ 5976695 (-) True CI01000300_05966800_05976695
CI01000300_05962858_05963880.mRNA mRNA downstream 219658 5962834 ~ 5964126 (-) True CI01000300_05962858_05963880
CI01000300_05956128_05961938.mRNA mRNA downstream 221846 5956014 ~ 5961938 (-) True CI01000300_05956128_05961938
CI01000300_06282739_06327586.mRNA mRNA upstream 98609 6282739 ~ 6327586 (-) True CI01000300_06282739_06327586
CI01000300_06347127_06393685.mRNA mRNA upstream 162807 6346937 ~ 6393685 (-) True CI01000300_06347127_06393685
CI01000300_06434048_06444297.mRNA mRNA upstream 249559 6433689 ~ 6444297 (-) True CI01000300_06434048_06444297
CI01000300_06445229_06453282.mRNA mRNA upstream 261029 6445159 ~ 6453282 (-) True CI01000300_06445229_06453282
CI01000300_06557191_06577750.mRNA mRNA upstream 372881 6557011 ~ 6578140 (-) True CI01000300_06557191_06577750
TU473685 other downstream 422595 5711685 ~ 5761189 (-) True G412378
TU472166 other downstream 1788663 4390320 ~ 4395121 (-) True G411012
TU471625 other downstream 2101682 4080204 ~ 4082102 (-) True G410508
TU471627 other downstream 2103245 4076764 ~ 4080539 (-) True CI01000300_04075307_04079312
TU471599 other downstream 2375577 3801139 ~ 3808207 (-) True G410498
TU473866 other upstream 30790 6214920 ~ 6215579 (-) True G412555
TU474008 other upstream 468868 6652998 ~ 6690333 (-) True G412681
TU474529 other upstream 1962402 8146532 ~ 8146889 (-) True G413140
TU475129 other upstream 2785318 8969448 ~ 8976000 (-) True G413664
TU476061 other upstream 3473919 9658049 ~ 9660805 (-) False G414498

Expression Profile