RNA id: TU488546


Basic Information

Item Value
RNA id TU488546
length 301
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G425462
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 11890933 ~ 11891233 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGTCCCCAAAACAAGGTTACGATCCAGGGGTGACAGGGCCTTTTCATCGTATGCTCCAAAACTGTGGAACTCTCCCCCAACTGACATTAGGGATGCCAATTCTTTAGCTGTTTTTGAAACTTTGCTCAAAACATTCTTTTTTAGGAAAGCTTTTATTTGATTGTTTTGTGATTTATTTCTTGTTGATTTGTATAATATATTGTCTTATATTGTTGTGTTTTTCTTTTTTGTAGCTTTCTTGGAAAGCGCCTTGAGAAAGCAACTTTTAAAGGCGCTATACAAAATAAATGTATTATTATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU488533 lncRNA upstream 32883 11857629 ~ 11858050 (+) True G425449
TU488531 lncRNA upstream 37161 11852113 ~ 11853772 (+) True G425447
TU488487 lncRNA upstream 43918 11845543 ~ 11847015 (+) True G425404
TU488527 lncRNA upstream 46398 11844231 ~ 11844535 (+) True G425443
TU488526 lncRNA upstream 46792 11843925 ~ 11844141 (+) True G425442
TU488550 lncRNA downstream 30429 11921662 ~ 11921962 (+) True G425466
TU488710 lncRNA downstream 85565 11976798 ~ 11984503 (+) True G425602
TU488721 lncRNA downstream 97624 11988857 ~ 11989311 (+) True G425613
TU488717 lncRNA downstream 173148 12064381 ~ 12065041 (+) True CI01000304_12065676_12071391
TU488741 lncRNA downstream 214107 12105340 ~ 12105578 (+) True G425632
CI01000304_11866424_11868022.mRNA mRNA upstream 22850 11866100 ~ 11868083 (+) True CI01000304_11866424_11868022
CI01000304_11812792_11817948.mRNA mRNA upstream 72520 11812514 ~ 11818413 (+) True CI01000304_11812792_11817948
CI01000304_11685224_11691071.mRNA mRNA upstream 199862 11685224 ~ 11691071 (+) True CI01000304_11685224_11691071
CI01000304_11676155_11681977.mRNA mRNA upstream 207802 11676155 ~ 11683131 (+) True CI01000304_11676155_11681977
CI01000304_11613446_11620345.mRNA mRNA upstream 270370 11613446 ~ 11620563 (+) True CI01000304_11613446_11620345
CI01000304_11993486_12061098.mRNA mRNA downstream 102253 11993486 ~ 12062218 (+) True CI01000304_11993486_12061098
CI01000304_12065676_12071391.mRNA mRNA downstream 173586 12064819 ~ 12071430 (+) False CI01000304_12065676_12071391
CI01000304_12213555_12231910.mRNA mRNA downstream 320821 12212054 ~ 12232732 (+) True CI01000304_12213555_12231910
CI01000304_12314575_12337592.mRNA mRNA downstream 423083 12314316 ~ 12337690 (+) True CI01000304_12314575_12337592
CI01000304_12340979_12347664.mRNA mRNA downstream 448614 12339847 ~ 12347890 (+) True CI01000304_12340979_12347664
TU487556 other upstream 1335229 10555614 ~ 10555704 (+) True G424559
TU487195 other upstream 1698038 10189315 ~ 10189404 (+) True G424251
TU487194 other upstream 1699135 10188822 ~ 10189404 (+) False G424251
TU487178 other upstream 1763611 10120399 ~ 10127322 (+) True G424246
TU486746 other upstream 2325360 9564605 ~ 9565573 (+) True CI01000304_09564068_09565679
TU488854 other downstream 537472 12434972 ~ 12439086 (+) False CI01000304_12437868_12439019
TU488858 other downstream 537472 12436554 ~ 12436605 (+) True G425718
TU488852 other downstream 546571 12437804 ~ 12439086 (+) True CI01000304_12437868_12439019
TU489575 other downstream 1665218 13556451 ~ 13573943 (+) True G426349
TU489538 other downstream 2438815 14330048 ~ 14330886 (+) True G426312

Expression Profile