RNA id: TU489906


Basic Information

Item Value
RNA id TU489906
length 362
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G426676
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 14398549 ~ 14398910 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTAAATAAATATATATATAACAGGTAAAAAGAAAATAAACTATTACTGCATTTATAGTGTCTCCTTCACTGTCTTGCATGTCATTTGCATTGGCACCATATTTTCAGCAAATAAAAGAAACAGAAATCTTACATTTAATTTATCCAATCTCATGTGTCTGTGAATCTGAGCACAGTGCCTCTGCACATATAATTTGTCAATAGTTTATAGATTTTCCATAACGTACAGCAAACTTGACCCTTTCTGTCGGCAAATCAATTAGGCGCAGTCAGTCACTTAACGCAGAGGCTCTCTCATGTATATCTCCAGTCTGAGAGCGGAGCTCCATGCAAATATAATGTAAGACAGGGATGCATTAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU489905 lncRNA upstream 1930 14396383 ~ 14396619 (+) True G426675
TU489596 lncRNA upstream 94256 14303712 ~ 14303850 (+) True G426370
TU489605 lncRNA upstream 110327 14274477 ~ 14288222 (+) True G426379
TU489569 lncRNA upstream 157118 14235877 ~ 14241431 (+) True G426343
TU489577 lncRNA upstream 259900 14137145 ~ 14138649 (+) True G426351
TU489908 lncRNA downstream 1634 14400544 ~ 14400954 (+) True G426678
TU489909 lncRNA downstream 2384 14401294 ~ 14401558 (+) True G426679
TU489910 lncRNA downstream 4617 14403527 ~ 14403744 (+) True G426680
TU489912 lncRNA downstream 13985 14412895 ~ 14413095 (+) True G426682
TU489913 lncRNA downstream 15460 14414370 ~ 14414631 (+) True G426683
CI01000304_14356867_14373980.mRNA mRNA upstream 23883 14356586 ~ 14374666 (+) True CI01000304_14356867_14373980
CI01000304_14352375_14355516.mRNA mRNA upstream 43033 14352375 ~ 14355516 (+) True CI01000304_14352375_14355516
CI01000304_14331169_14331855.mRNA mRNA upstream 66576 14331064 ~ 14331973 (+) True CI01000304_14331169_14331855
CI01000304_14304022_14317252.mRNA mRNA upstream 80524 14304022 ~ 14318025 (+) False CI01000304_14304022_14317252
CI01000304_14231227_14261460.mRNA mRNA upstream 136386 14231073 ~ 14262163 (+) True CI01000304_14231227_14261460
CI01000304_14695603_14740389.mRNA mRNA downstream 296693 14695603 ~ 14741079 (+) True CI01000304_14695603_14740389
CI01000304_15034188_15038152.mRNA mRNA downstream 633307 15032217 ~ 15038498 (+) False CI01000304_15034188_15038152
CI01000304_15040739_15045239.mRNA mRNA downstream 641642 15040552 ~ 15045257 (+) True CI01000304_15040739_15045239
CI01000304_15047768_15063987.mRNA mRNA downstream 648858 15047768 ~ 15064170 (+) True CI01000304_15047768_15063987
CI01000304_15140709_15147357.mRNA mRNA downstream 741651 15140561 ~ 15147557 (+) True CI01000304_15140709_15147357
TU489538 other upstream 67663 14330048 ~ 14330886 (+) True G426312
TU489575 other upstream 819702 13556451 ~ 13573943 (+) True G426349
TU488854 other upstream 1959463 12434972 ~ 12439086 (+) False CI01000304_12437868_12439019
TU490061 other downstream 549980 14948890 ~ 14950592 (+) True G426828
TU491290 other downstream 1486544 15885454 ~ 15889591 (+) True G427860
TU491458 other downstream 1684320 16083230 ~ 16083714 (+) True G428017
TU491561 other downstream 2105952 16513714 ~ 16541045 (+) True G428096
TU491635 other downstream 2357036 16755946 ~ 16761111 (+) True G428157

Expression Profile