RNA id: TCONS_00021937


Basic Information

Item Value
RNA id TCONS_00021937
length 4283
lncRNA type antisense_over
GC content 0.35
exon number 2
gene id XLOC_009930
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 25219435 ~ 25242310 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTAAGCAAGGTTGAGTTTTTGTGACCAAATCTAAATGCTGGAGTCTGCTGATGTTTATATGTGACCAAATGCctaaattaagtattaaatattatacaGTGATTAGGCCTTTTCAGAAGACTTGCATTAAACCACTGTTCAGATTTAAATTTTGATCTCTTTATGAAAGCAATATGAAATTCAAAGGAGGAATAGGAATCTCTCGGATTTGAAGATAAACTCTGAAGATAAACAAAAGTTACTGGTTTGGatcaacatgaggGTTTCCAAAGGCAACTGCTCTCCATCAAAGGTGTGTGTTATTGCTGAAGGTGCGCggcgtgtgcatgtttgtgtcaCACCGATGAAGCCCAAACTGGCTGCAGAAAGAGAAATAGTACTAATAAAGGCAGAGAAGACTGTCAGGTGACCCAAATAGGTACACAAAGGTATGCCAACGTTATTGTATGGAAGTTCTGTTGTCTTACAAGATCTTtgatttttttcctgtaaattaataaatagctgTCTTGACTCTCAGTAGACTGGATGTTAGCTGAAAAAAAGTAAGAACATGAGACCATTTTTAGGGTTACTGATCAATAATGTGCTACTGATCACTGTGAaagaattattttgtttaaaggtaattCCTATGTGTCATGATGACTATCAGAATATATTTTCTATTCCAGTTCATACAGTAATGATCATTAGAGCTGCACTGACCTCTAGAGGAGCATGACATTTCAACTAAAATGATGCTCACATACTGTATCACAGATAAAAAGGGCAGGTTGTGTTGTGGGGTGTGTACTACCCACTGTAGAAGAGATTGCACATGATCGTATGATGGACAAATTTGTCAGTATGATGAACCATGATAATCATCTCCTTTCTGATATGGTCCAAGCATGTGCAAGCTCTTTAAGTGCAAGATTAATTCAGCCCCGGTGTTACAGAGAAAGATGCAGGAAATATTTTTTACCAACAGTGGTCAGATTGTAtattaaaagtcatttattttatctatctTATAGTATGGAGAGTTCTGCAGTGACATGTGAATTTCTctttgggattaataaagtcaaacaAAGTTATACACCAGGCAGTGGGTATTAAATAGTATCGGGTCAGTTTTAGTTGACTgaaattaaatgtgtaaaaaaaattaaatgaataaaataagtaaactaaatataattcaaattaaaactataatacctaattaaaagaatgaaaaaacttCAATAGTTCTCCAGTGATGCCAAAACAACACTAAAATCCTGCTCTGTcaataacttttttaattaaaatttactttttctatttaatgttaaatattaaatgtgtttgacaagttttatgtttaatgtaaaatttCATAGTTTATGTAGAAAGGATTGGAGAGGTTCCCAAAGTCTCCTGAATATGTCCTGTTAGTGATTGAGATTATAGGTTAATTTTTACAAAGGAAGAAAGACTGACAACTGAGAAATCCATATGAAAATAGTTGGAATTTGAGAAGTAGACCATTTTAGTAATATACATTTCTTAGCCGGAAATGTAAGAGTCGTAAACAGAGGTTTGAGGTCTGAGTCAAAAAGGTCTTCAGGAATGTCATTGAACAAAAAGTGAGGGGgagaaaataaattgtttaccaatTATCTCCTGGATTGCAGAATGAACCCCTCTCCAAAATGGTAGACTAAAATACATGACAATAATGTGTCCTTACAAGTTTTGCACCTAAACAGAGGTCGGAACAAGCTAGAAACATATTATGCAGATGAACAAGCATAAAATATATTCTGTCgaaaattttacaattttgttCATTTACGGAAATTGAGgtatattttggaaaaatgcCATTACAGATCTTGGACCAATTAAACAGAATTTATAggtctggaatagccttcctgataatgtccgaggctctgACACacactctcagttcaaaactagattaaagacctatctgtttagtaaggcatacactcaatgcatcacttagcgggtttccacacaagtttctgcatcttgtttatatacactatgaacagcagctatgctaattattctctttattctccatttccacctgggaatACCCATctcgaggtcctcagattatgcggagtcactgattggatccaagaccagcaacgagatgatcccaaggtgtccatatccgggaccaggccgtatcctgattccagtgacgctccagggacagacgagtcttcgctgaggccagcttccagcctccactgctgaaactgcagctctgcacaagacttttggccagcagagaaattaaaatggtcgtgccgaactgagtctggttctctcaaggttttttttcttcactctcctattggtgaattttttttccctctccgctgtcgccactggcttgcatggttcaggatcagaaaagctactcatcgatgaatttgctcttcagtgtttggactctcagtaatgattcaaaccacactgaactgagctaaactaaactgaacttaaacactaaaaactgaactaccctgatccagttactatgaccatttatgtgaagctgctttgacacaatctacattgtaaaagcgctatacaaatgaagCTGAATTGGATTAAATAGGTCCTGTTGCCATAATGGTTTCAAGGAATTATAAACTGAGTAATAGGAGTAAACTAATAaggcatttaatttaaaaatgagctCTTGAAAAAACTGACTGAGAGCATGGTTTCTTCTAGTTCcgataatttaaaacaaaactggTTTTGCTTTAATAGAGACtctataaaatgttatattttttaaaagtcttcaGAGGGAATATCAAACTCTGTTCTAATTTGTTCAAATGATTTCACAATTTCAGAGGTAAGCATTCCTGAAAAGTCCAACAAACCTTTAAAACTCCACTCCTGCAATCCAATTCTCCTAATTTAAGTGGGGAAATCTGGGTACAAAGCCAAATGGGGAATATATGGATATAATATGAGGGATATTCAAATGTTTTTCCCATCATTCCAAAACAGagatatttttaaattacaatgtaaaattcaattcattcattttagcaacatctgtttaaattatttttcaacacaAAAAATATACCACTGATAACACTTATATTTAGGAGATATTTGCTTATTATAAAGACACTTTTGTGTGGACAATTTAATGGAGAACGTTCCAGTTGTTTTTGTGTGATTTCACCAGGGTTTCCTTAAACATTCTCTTTCTCTTCTGTCTAGACACTTTAAACTGTATGCGTATTGTGTGGTGATGGTGACCAAAACTTTTGCCACCACTTTTTAAAAGTAGCACATTCTCTTCAGggcatatataaaaaataaatttaaaaagcccCGGAAGAAGTAGGTCATTCAGATCTGACACACCATGACCCAATTTGCTATCTCACTATTTGCTATGTTCCCTTAAATTTGTGCATGAGTGAAGCAAACTGCGTAATATATCAATGTCAAACTGATCTTTTACAGGTCAGCTTGTAAGTCCTAATAGGTAAATTGTATTTTGTACTATTCTATCTTATATGACGATATTGTAAACACGCACATGAATGTTGAATGCTCCATACCACAGCAACATGCAAATATAATCCTCAATTGTCTTTGCTATAGAGAGAGCCTCTTGTACTACGATGGTTTGTTGTCCAAATGATCACAAAGGAGTCCATTATAGGAAACACAAGATGAAAGTGCTCTTCAGAAAGCATCAGGCATTGTGGCATAATATATTTCAAATCTGGCCTTCATTCTAGTACACGTACATTTTGCTTTTCTCGTGATTGATGGCTAGTGCCAATTACTGTAATGTACAAAGGCTTGTCTTTATAAATCATGCAGAAACAACATGTATACAAGCACAATGCAGGCTTTTACATGCAAGACAAGTTTAATAAACATATACATTAGGCCTATGCATTTAACATCTATCTAATATCTATAtctgttttttaatatatacagatgttgtgtgtgcatgtgtgtgtaaaatacactgtaaaaaatcctggttgcttaaacattttaagctgaataaaattaaccttatgagtccattgaacatTGATTATTGACTTAAACATTGAACTGACTTAAatcagcttgcataacttataaactTAAGTTAGAGCATGATTAACTTGGTTTAATAGGTTATaatgacctaaaacatatgctgtcaggactatttggtcatattttttacagtgtagatatttGACATgattttacattcattttgttt

Function

GO:

id name namespace
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021936 lncRNA upstream 5457 25207618 ~ 25213978 (+) True XLOC_009929
TCONS_00021935 lncRNA upstream 140405 25076147 ~ 25079030 (+) True XLOC_009918
TCONS_00021934 lncRNA upstream 322324 24834791 ~ 24897111 (+) False XLOC_009910
TCONS_00019778 lncRNA upstream 322324 24896017 ~ 24897111 (+) True XLOC_009910
TCONS_00021716 lncRNA upstream 377123 24834775 ~ 24842312 (+) False XLOC_009910
TCONS_00021940 lncRNA downstream 302116 25544426 ~ 25550654 (+) True XLOC_009942
TCONS_00021941 lncRNA downstream 310012 25552322 ~ 25579827 (+) True XLOC_009943
TCONS_00021942 lncRNA downstream 571959 25814269 ~ 25828758 (+) True XLOC_009947
TCONS_00021718 lncRNA downstream 588394 25830704 ~ 25831076 (+) True XLOC_009948
TCONS_00021943 lncRNA downstream 716586 25958896 ~ 25960158 (+) True XLOC_009949
TCONS_00019798 mRNA upstream 18678 25196572 ~ 25200757 (+) True XLOC_009928
TCONS_00019797 mRNA upstream 31626 25184207 ~ 25187809 (+) True XLOC_009927
TCONS_00019796 mRNA upstream 37893 25171832 ~ 25181542 (+) True XLOC_009926
TCONS_00019795 mRNA upstream 49590 25163443 ~ 25169845 (+) True XLOC_009925
TCONS_00019794 mRNA upstream 56222 25137483 ~ 25163213 (+) True XLOC_009924
TCONS_00019799 mRNA downstream 3547 25245857 ~ 25250414 (+) True XLOC_009932
TCONS_00019800 mRNA downstream 17003 25259313 ~ 25272633 (+) False XLOC_009933
TCONS_00019802 mRNA downstream 43688 25285998 ~ 25295185 (+) True XLOC_009934
TCONS_00019803 mRNA downstream 54079 25296389 ~ 25315136 (+) True XLOC_009935
TCONS_00019804 mRNA downstream 74663 25316973 ~ 25337834 (+) True XLOC_009936
TCONS_00019788 other upstream 122873 25095483 ~ 25096562 (+) False XLOC_009919
TCONS_00019780 other upstream 300478 24905556 ~ 24918957 (+) True XLOC_009913
TCONS_00019779 other upstream 321182 24898171 ~ 24898253 (+) True XLOC_009912
TCONS_00019777 other upstream 338217 24881122 ~ 24881218 (+) True XLOC_009911
TCONS_00019767 other upstream 702343 24516092 ~ 24517092 (+) False XLOC_009904
TCONS_00019801 other downstream 23489 25265799 ~ 25271837 (+) True XLOC_009933
TCONS_00019805 other downstream 99106 25341416 ~ 25341543 (+) True XLOC_009937
TCONS_00019806 other downstream 99414 25341724 ~ 25341811 (+) True XLOC_009938
TCONS_00019823 other downstream 1169336 26411646 ~ 26411778 (+) True XLOC_009956
TCONS_00019829 other downstream 1213900 26456210 ~ 26457614 (+) False XLOC_009958

Expression Profile

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