RNA id: TU512162


Basic Information

Item Value
RNA id TU512162
length 623
lncRNA type read_through
GC content 0.40
exon number 2
gene id G446171
representative True

Chromosome Information

Item Value
chromosome id CI01000314
NCBI id null
chromosome length 1736912
location 1215825 ~ 1290058 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCTTATATGCTGAAACCACTTCACTGATGGGTCTGAATTTGTGATTGTCGTGTTGTTGTGAATCTCTGCACACTAAACACACAGGCTGTTTGTCCTCCAGACAGAAGAGTTTGAGTTTCTCACTGTGTAAACTGCAGATCTCCTCAGATCCTGATGAACTCGTCTCATTTCTCTCCGTCAGGACCAACTCACATAAGTTTTTTAACACAAGATTAAGAGGAGGATCAGGTTTTGAGGACCTTCTCCTGCAGACAGGACACTCCTGAGTTTTCTTGGTTCTCCAGAACTGTTGAAGACACTCTTTACAGACACTGTGACTACATGATAAAACAACAGGAGTCTTGAAGATTTCACAGCACACGGGACAAGAAAGTTCTTCAGCAGAAACATTTAGTGAAGCCATTTTCACTGTTTGAGCTCCAGCAACATAAACTTTACTTTCACTTTCTGAACGACGGTTTTAAAAATGAATCACCTTGAGAATCACAACGATCTGCTGTCTGTTCAGAAACAAATGCCTCAAAAATCCTTCTTGAAAGTGTTTCTCTTCATTCTCCACTGATCGCTGATTCTTTATTGCTTTTGTCAAAAGAGAAGAGAGTCAGAATGACAGAAAAGAGAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU512159 lncRNA upstream 7704 1206793 ~ 1208121 (+) True G446170
TU512151 lncRNA upstream 12134 1203460 ~ 1203691 (+) True G446166
TU512056 lncRNA upstream 15156 1200198 ~ 1200669 (+) True G446089
TU512055 lncRNA upstream 16017 1199301 ~ 1199808 (+) True G446088
TU512054 lncRNA upstream 16614 1198890 ~ 1199211 (+) True G446087
TU512212 lncRNA downstream 8440 1298498 ~ 1298783 (+) True G446203
TU512245 lncRNA downstream 273532 1563590 ~ 1563982 (+) True G446227
TU512218 lncRNA downstream 326865 1616923 ~ 1618731 (+) False G446209
TU512220 lncRNA downstream 326865 1616923 ~ 1623604 (+) False G446209
TU512222 lncRNA downstream 326865 1616923 ~ 1618731 (+) True G446209
CI01000314_01096672_01145574.mRNA mRNA upstream 70229 1096672 ~ 1145596 (+) True CI01000314_01096672_01145574
CI01000314_01059252_01065169.mRNA mRNA upstream 150018 1059252 ~ 1065807 (+) True CI01000314_01059252_01065169
CI01000314_00753601_00757013.mRNA mRNA upstream 458573 753513 ~ 757252 (+) True CI01000314_00753601_00757013
CI01000314_00668853_00684135.mRNA mRNA upstream 531420 666915 ~ 684405 (+) True CI01000314_00668853_00684135
CI01000314_00603636_00621698.mRNA mRNA upstream 594127 603636 ~ 621698 (+) True CI01000314_00603636_00621698
CI01000314_01334065_01347608.mRNA mRNA downstream 44007 1334065 ~ 1348310 (+) True CI01000314_01334065_01347608
CI01000314_01398459_01474471.mRNA mRNA downstream 108401 1398459 ~ 1474471 (+) True CI01000314_01398459_01474471
CI01000314_01635113_01658762.mRNA mRNA downstream 345055 1635113 ~ 1658762 (+) True CI01000314_01635113_01658762
CI01000314_01695225_01696495.mRNA mRNA downstream 405167 1695225 ~ 1696499 (+) True CI01000314_01695225_01696495
CI01000314_01700805_01709471.mRNA mRNA downstream 410747 1700805 ~ 1709537 (+) True CI01000314_01700805_01709471
TU511312 other upstream 902804 311532 ~ 313021 (+) True G445422

Expression Profile