RNA id: CI01000325_09288339_09296072.mRNA


Basic Information

Item Value
RNA id CI01000325_09288339_09296072.mRNA
length 2035
RNA type mRNA
GC content 0.48
exon number 13
gene id CI01000325_09288339_09296072
representative True

Chromosome Information

Item Value
chromosome id CI01000325
NCBI id null
chromosome length 10587162
location 9288032 ~ 9296126 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACAAAAATTCAAAAATGACCGATCTCCCTCCTGAAATGTTATAGTCCCTAAGCAATGCAGCTTGTTGATTCAAGCATTTTTTATTCTACGAAGAGATATTCAGTCCTGAGTGAATGGACATCAGTGTCACAACTGTCTCGCTGTGACTGGGTGAACTTGGAAGACAGTGAAAAGGTGAGGCAGCCGTCTGATGATTACTGGGGTGAGTATGGCCCGTACGGAGCCTGCAGCCGCACATGTGGCTCCGGAGTAGCTGTGAGAACCAGAGTCTGCAACACTATGAGGTTGGAATGCCCTGTAGGAGCTCTAGATTTTCGCGAAGAACAGTGTTCTCATTTTGACCGAATGGAGTTCCAGGGAAAACGTTACACCTGGCAGCCGTATTATGGAGCGTCAAACCCATGTGAGCTGGTGTGTGTGCCCAGAGGAGAGAACTTCTACTACCGTCACAGACCCACTGTGGCGGACGGCACACCATGCTACGTGGGTCGCAGAGACATCTGTGTGGAGGGTGTCTGCAGAGCGGTGAGCCATGGGGAGATTGTGGCATTTGAGGATCACTCTCTTCCTGTCACTTCTGGACATGGACCTGCTGCTGCTCATCTGGACACCTACAGGTACACATACAGCACCTATTCAGAGTGTACTCTTCACTGTGGTGGGGGCGTGCAGACCCGTACTGTGTACTGTATTAATGAGAGAACGTCAGCAACGGTAGATGAATCTCACTGCATTGCACAAGGCCTCAGGAAACCAACTTCCCAGGAGGCCTGCAATCAGCACCCTTGTGTCGAGTACAGTGTTGGTCCATTTGGTGATTGTTCAGTGACGTGTGGCGAAGGACAGCAGACGCGGGAGGTGTTGTGCATCGGTGGCAGAGGAGAGCGTCTCCCTGAGCACCACTGCAGGGGTCTCACACGTCCACATGAGATCAGATCCTGTCAGAGACCAGCTTGCCACAAAGTTTTTAGATACTACACCAATGACTTCAGCTTGTGCACTCGTAGCTGTGGAACTGGTACTCGTGAGCGCAAAGTGGTATGCATGGATTTGGATCTCCATCAATATGCAGATGATAGATGTGCTTCTCTCAGCAGACCTCATGCTGTGGAGAACTGTAACACACAGCCCTGCCCTGGTGCACAAATGGTGCCCAGCGTTCAGGACCCTAGTGATTACGAGAGCTCCTTGCGTGGATTTGTGCCTCATACCCATGATGCAGCCTCAGTTCACAGACCAAGCGATCCATACCCCACAGTGACCGGTCCGCATTGTGCCCAATCATATTACGGCTGCTGTCCTGATGGCCACACTACTGCCTCTGGACCTCGTGGAGAAGGCTGTGCTCACGATGACTGTCATAGGTCCAGATATGGCTGCTGCCTGGATGGAGTAACTTCTGCTCATGGTTTTGGAAGAGCAGGATGTCCTGATTCCCCCTATAGGGACTATAGCCCAGTCCGTCAACCCTCTGCTAGTGTGTGCTCTTTGGCACAGGAAGTTGGGTCCTGTTATGAATGGACAGCTCGTTTCTACTTTGATCATTCCTCTGGCTCTTGCTTGCATTTCTGGTACGGTGGTTGCCAAGGAAATGGCAATAACTTTGTCTCCAAAGAGGAATGTGAGCGGACATGTAAGGCTTCTGCCAGAGGCCTTGCCCCAAGAGAACCAACATCCAGGAGAGGGATCAACGGGGTCAGAGGTTATAGAATGAGATCCCGTGCATAAAGGGGTCAAAAGAAAGGTCATTGCAATCCCACAACAAACAAATCCCACTCACATACATGTACAAAACAACAATTTATTCAAAGGTGCACACAGTAATTTTGCGCTAGCTGATATGAAATATATCTTGTGTTTATACTGACATCTATTGGCATTCATTTGTGAAAAAAATATTGAGTGCAATCAAGCTTTTTATTGTACGTTCAGATAAACAGATTCACTTTACAGTATTTGTCAAACATGACAGCATCAAACAAGTAATTTACACATCCAGTCTCAATAACAGTTTCATTAATTTCATGAAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU537716 lncRNA downstream 83185 9204570 ~ 9204847 (-) True G468481
TU537702 lncRNA downstream 110290 9177533 ~ 9177742 (-) True G468467
TU537697 lncRNA downstream 128468 9158746 ~ 9159564 (-) True G468462
TU537122 lncRNA downstream 201079 9086569 ~ 9086953 (-) True G467978
TU537114 lncRNA downstream 275777 9011924 ~ 9012255 (-) True G467970
TU537695 lncRNA upstream 34904 9331030 ~ 9333199 (-) True G468460
TU537791 lncRNA upstream 77865 9373991 ~ 9374349 (-) True G468550
TU537792 lncRNA upstream 79017 9375143 ~ 9375365 (-) True G468551
TU537803 lncRNA upstream 90328 9386454 ~ 9395538 (-) True G468562
TU537786 lncRNA upstream 283864 9579990 ~ 9581436 (-) True G468545
CI01000325_09286047_09286556.mRNA mRNA downstream 1476 9285534 ~ 9286556 (-) False CI01000325_09286047_09286556
CI01000325_09266964_09281814.mRNA mRNA downstream 5970 9266624 ~ 9282062 (-) True CI01000325_09266964_09281814
CI01000325_08919961_09083730.mRNA mRNA downstream 204302 8919961 ~ 9083730 (-) True CI01000325_08919961_09083730
CI01000325_08701427_08704727.mRNA mRNA downstream 583305 8701300 ~ 8704727 (-) True CI01000325_08701427_08704727
CI01000325_08645444_08676032.mRNA mRNA downstream 612000 8644731 ~ 8676032 (-) True CI01000325_08645444_08676032
CI01000325_09334619_09368476.mRNA mRNA upstream 38478 9334604 ~ 9368476 (-) True CI01000325_09334619_09368476
CI01000325_09400787_09422170.mRNA mRNA upstream 104661 9400787 ~ 9422170 (-) True CI01000325_09400787_09422170
CI01000325_09434932_09471529.mRNA mRNA upstream 138779 9434905 ~ 9471529 (-) True CI01000325_09434932_09471529
CI01000325_09518831_09533382.mRNA mRNA upstream 222637 9518763 ~ 9533787 (-) True CI01000325_09518831_09533382
CI01000325_09537381_09540937.mRNA mRNA upstream 241090 9537216 ~ 9541330 (-) True CI01000325_09537381_09540937
TU537690 other downstream 708 9287209 ~ 9287324 (-) True G468455
TU536859 other downstream 590449 8679172 ~ 8697583 (-) True G467741
TU536851 other downstream 716554 8564630 ~ 8568433 (-) True G467737
TU536674 other downstream 1332840 7946345 ~ 7955192 (-) True G467578
TU536664 other downstream 1671202 7615486 ~ 7616830 (-) True G467570
TU537962 other upstream 870973 10167099 ~ 10192342 (-) True G468702
TU538097 other upstream 1020004 10316130 ~ 10316685 (-) True G468823

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00035869 False 1670 mRNA 0.53 13 NC_007131.7 33499609 ~ 33512275 (-)