RNA id: TU537122


Basic Information

Item Value
RNA id TU537122
length 245
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G467978
representative True

Chromosome Information

Item Value
chromosome id CI01000325
NCBI id null
chromosome length 10587162
location 9086569 ~ 9086953 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GACTTTTTGAATTTGAAGATTAAGGTAAATTGTACTTAATTTGTCTCCGGGAAACATGTAGGTATCTTCTGTTGCTTCCAAAGGGCAGTACTAAATTAAGAAAATTGATATTTAAACAAATTTGGACATCTTCATCCTGTTCAAAAGTTTTCACCCCTGACTCTTAATGCATTGTGCTTCTTTCTGGAGCATCAGTGAATGTTTGAACCTTTTTTATTAGTTGTGTTTGAGTCCCTCAATTGTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU537114 lncRNA downstream 74314 9011924 ~ 9012255 (-) True G467970
TU537088 lncRNA downstream 189305 8897049 ~ 8897264 (-) True G467944
TU537087 lncRNA downstream 191771 8894542 ~ 8894798 (-) True G467943
TU537086 lncRNA downstream 192317 8893917 ~ 8894252 (-) True G467942
TU537085 lncRNA downstream 194033 8892246 ~ 8892536 (-) True G467941
TU537697 lncRNA upstream 71793 9158746 ~ 9159564 (-) True G468462
TU537702 lncRNA upstream 90580 9177533 ~ 9177742 (-) True G468467
TU537716 lncRNA upstream 117617 9204570 ~ 9204847 (-) True G468481
TU537695 lncRNA upstream 244077 9331030 ~ 9333199 (-) True G468460
TU537791 lncRNA upstream 287038 9373991 ~ 9374349 (-) True G468550
CI01000325_08919961_09083730.mRNA mRNA downstream 2839 8919961 ~ 9083730 (-) True CI01000325_08919961_09083730
CI01000325_08701427_08704727.mRNA mRNA downstream 381842 8701300 ~ 8704727 (-) True CI01000325_08701427_08704727
CI01000325_08645444_08676032.mRNA mRNA downstream 410537 8644731 ~ 8676032 (-) True CI01000325_08645444_08676032
CI01000325_08609784_08639480.mRNA mRNA downstream 444530 8609624 ~ 8642039 (-) False CI01000325_08609784_08639480
CI01000325_08571807_08594165.mRNA mRNA downstream 491833 8571453 ~ 8594736 (-) False CI01000325_08571807_08594165
CI01000325_09266964_09281814.mRNA mRNA upstream 179671 9266624 ~ 9282062 (-) True CI01000325_09266964_09281814
CI01000325_09286047_09286556.mRNA mRNA upstream 198581 9285534 ~ 9286556 (-) False CI01000325_09286047_09286556
CI01000325_09288339_09296072.mRNA mRNA upstream 201079 9288032 ~ 9296126 (-) True CI01000325_09288339_09296072
CI01000325_09334619_09368476.mRNA mRNA upstream 247651 9334604 ~ 9368476 (-) True CI01000325_09334619_09368476
CI01000325_09400787_09422170.mRNA mRNA upstream 313834 9400787 ~ 9422170 (-) True CI01000325_09400787_09422170
TU536859 other downstream 388986 8679172 ~ 8697583 (-) True G467741
TU536851 other downstream 515091 8564630 ~ 8568433 (-) True G467737
TU536674 other downstream 1131377 7946345 ~ 7955192 (-) True G467578
TU536664 other downstream 1469739 7615486 ~ 7616830 (-) True G467570
TU534579 other downstream 3458401 5626213 ~ 5628168 (-) True G465716
TU537690 other upstream 198579 9287209 ~ 9287324 (-) True G468455
TU537962 other upstream 1080146 10167099 ~ 10192342 (-) True G468702
TU538097 other upstream 1229177 10316130 ~ 10316685 (-) True G468823

Expression Profile